Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m20r
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 29 1.4
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4) 28 1.9
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 27 4.3
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 27 5.7
SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05) 27 5.7
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24) 26 7.5
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16) 26 7.5
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 26 9.9
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 26 9.9
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 241 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 122
KRDAP DN S KK L +E+ +P + K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819
>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
Length = 721
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 241 KRDAPKEDNSLNTLAESAKKTIEELREKVE 152
KR APK+ N+ + L +K EELR++ +
Sbjct: 62 KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 244 VKRDAPKEDNSLNTLAESAKKTIEELREKVESAL 143
++R ++DN L ++ E K T EEL+ +E +
Sbjct: 172 LQRQLSQKDNQLQSMKEDVKNTEEELKLDLEKVI 205
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = -2
Query: 253 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 74
H D K + E KK + ++RE+ S L P + SF + +
Sbjct: 80 HGLASHDKKKRERPSLVARERMKKRLRKIREEFGSELLPIVYVREIVLAYISFCRLFMYV 139
Query: 73 KP 68
KP
Sbjct: 140 KP 141
>SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)
Length = 315
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 208 NTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNE 89
N A S KK + + + + S PE +KK VDS E
Sbjct: 81 NRAANSVKKELNKFADWILS-FVPEPIKKTVNKQVDSLKE 119
>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
Length = 283
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 241 KRDAPKEDNSLNTLAESAKKT-IEELREKVESALAPETVKKNFGTMVDSFNE 89
K+ +ED L KK+ E+ K E + P+ +K+F +FN+
Sbjct: 70 KKKRQREDKQLGEEPSKVKKSKTEQEHVKTEKGVTPQNSQKHFEKKPKNFNK 121
>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
Length = 908
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 144 KADSTFSLNSSIVFFALSASVFRLLSSLG-ASRLTNACTLARQIAN 278
K T NS ++F L V R SSL S N C LA N
Sbjct: 763 KDSRTLKPNSDYIYFDLKQKVVRSASSLSYPSVCRNGCCLANPCLN 808
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -2
Query: 226 KEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVD----SFNEFYKNLK 71
K ++ L +S ++ EE+ EK+++ + + + + T D FNE K L+
Sbjct: 1353 KNQAEVDALKKSLEEKTEEMNEKIKTLNQVKRIARRYKTQFDEQSKEFNEVKKKLE 1408
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 232 APKEDNSLNTLAESAKKTIEELREKVE 152
A E + + T + ++T++ELREKVE
Sbjct: 2048 AASEADLMKTTLQVREETVDELREKVE 2074
>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 25.8 bits (54), Expect = 9.9
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = -2
Query: 241 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVD-----SFNEFYKN 77
K+ K+D S + + TI++ ESAL VK FG D SF Y
Sbjct: 192 KKSTNKQDRSSHVRSSKNPITIQQQSSAKESALVRNQVK--FGKTKDEQNPESFENDYVK 249
Query: 76 LKPAEAPKA*E 44
P++ P+ E
Sbjct: 250 KAPSQVPQVLE 260
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 25.8 bits (54), Expect = 9.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 123 FLTVSGAKAD--STFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANKIISSL 296
FLT S +D ++ SL S + + S SVF SSL + LT++ +L+ + + S+
Sbjct: 597 FLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSDFLTSSSSLSV 656
Query: 297 F 299
F
Sbjct: 657 F 657
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,518
Number of Sequences: 59808
Number of extensions: 176693
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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