Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m19r
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    31   0.17 
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    31   0.23 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.70 
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.2  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   4.9  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   4.9  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   6.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.6  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
 Frame = -3

Query: 454 KLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV--YFKIMSTEDKQYLKLDNTKGX 281
           K ID+     I +G  K       S+ F P  E +R+    K++  ED     LD  K  
Sbjct: 219 KDIDENEEVTINYGSEKGSAEFLFSYGFLPEPEGDRITNVMKLLIPEDSND-SLDLAKRR 277

Query: 280 SDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNRE--YNSVMTLDEDMAANEDREAL 107
           S       +  +D+    W+  P ++     F V N E   N  M  DE  A   D E  
Sbjct: 278 SCKTPPMIEFVSDSSGELWWHAPFLF-----FSVLNVEDFTNFKMVCDESKAQTVDWEFE 332

Query: 106 GHSGEVSGYPQL 71
           G    V   P+L
Sbjct: 333 GQKCSVEDLPKL 344


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 305 QVLFVFGGHDLEVYSVVFQHGGK 373
           +V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 408 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTVIAPLTPSN 232
           P T  +     S P P   T+  TS S PP  NST + +T  V   + SST   P  P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321

Query: 231 TTGT 220
           T+ T
Sbjct: 322 TSST 325



 Score = 29.5 bits (63), Expect = 0.53
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 414 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPP-KTNST*SSITRKVXVMTVSSTVIAPLTP 238
           VTP   P   S  S PP   +T  T  S  P  + ST  + +  +     S+T + P  P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 237 SNTTGT 220
             +T +
Sbjct: 361 PTSTSS 366



 Score = 29.5 bits (63), Expect = 0.53
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 414 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTV-IAPLTP 238
           VTP   P   S  S PP   +T  T  S  P  +++ S  T      T +ST  + P  P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414

Query: 237 SNTTGT 220
             ++ T
Sbjct: 415 PTSSST 420



 Score = 29.1 bits (62), Expect = 0.70
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 414 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVXVMTV-SSTVIAPLT 241
           +TP   P   S  S+P P   T+   + S P  T ST  S T    + T  SS++  P+T
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST--SCTTSTSIPTGGSSSLSTPIT 248

Query: 240 PS 235
           P+
Sbjct: 249 PT 250



 Score = 28.7 bits (61), Expect = 0.92
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 423 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVXVMTVSSTVIAP 247
           L++ TP T P   S  S    W  TT  T  S    T+ST   +T      T  ++  + 
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657

Query: 246 LTPSNTTGT 220
            T S++T T
Sbjct: 658 STSSSSTAT 666


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 688 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 545
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 94  LRCAPRLHGLRWRPYLHQVS 153
           L  A +LHG+RW  Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 721 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 605
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 285 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 434
           PF+L++ R C    D  +KY L+ +     F  + L+V +L    A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 332 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 433
           DLE   +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -3

Query: 280 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 146
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 484 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 392
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -3

Query: 502 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 323
           +  T K +N+++H+ L L     ++   FG S D +S ++    +   +N   YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201

Query: 322 EDKQYLK 302
           +   ++K
Sbjct: 202 DGFDFIK 208


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 434  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 550
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,153
Number of Sequences: 5004
Number of extensions: 66168
Number of successful extensions: 269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)