Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m19f
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.11
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.19
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.57
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 4.0
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 5.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.3
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 5.3
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 26 5.3
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.3
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 5.3
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 7.0
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 619
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 620 SKP 628
+ P
Sbjct: 250 TVP 252
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 622
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358
Query: 623 KP 628
P
Sbjct: 359 VP 360
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 622
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 623 KP 628
P
Sbjct: 413 VP 414
Score = 29.1 bits (62), Expect = 0.57
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 443 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 619
+TP P S S+P P T+ + S P T ST S T + T +ST P+TP
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPPTGNST--TPVTP 303
Query: 620 SKP 628
+ P
Sbjct: 304 TVP 306
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 449 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 610
P T + S P P T+ TS S PP NST + +T V + SST P
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP 317
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.19
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 552 QVLFVFGGHDLEVYSVVFQHGGK 484
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 169 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 312
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 136 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 252
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 572 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 423
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.0
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = -2
Query: 594 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 415
D + + +R+ + GG E YS + Q KL + N VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287
Query: 414 VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 307
D + G + + L LL +D +++ +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 525 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 424
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 618 GVSGAITVDDTVIT 577
G+ GAIT+DD++IT
Sbjct: 120 GIEGAITLDDSIIT 133
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 630 SGFEGVSGAITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQ 496
SG+ + + + D ++ R +RV + L+ GH L +YSV+++
Sbjct: 514 SGYGDILVSGSYDSSI--RIWRVSTGECLYHLRGHSLRIYSVLYE 556
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 373 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 465
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 533 PKTNST*SSITRKVLVMTVSSTVIAPLTPSKPLVP 637
P + SS+ R + SST I P+ P+KP P
Sbjct: 975 PALSPAPSSLARSSVSSQRSSTSIIPIKPNKPTKP 1009
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +1
Query: 475 SWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKT 627
+WK ++E R+++ KQYL ++ + D ++ D +D T
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSDKLPT 588
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 606 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 484
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 272 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 93
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 92 EASAHTARTKA 60
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -3
Query: 230 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 69
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 68 TKANKVSLI 42
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +1
Query: 355 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 534
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 535 EDKQYLK 555
+ ++K
Sbjct: 202 DGFDFIK 208
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 230 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 114
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,038
Number of Sequences: 5004
Number of extensions: 58461
Number of successful extensions: 248
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -