Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m18r
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.39 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.8  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   4.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 458  LEIVQLITYDRKKFRRMRLHCFIDFAVKYYLYVKRSKTV 574
            +++ Q++ Y +KKF+RM +  ++ +A  + +    S  V
Sbjct: 1195 IQLKQVVNYKKKKFQRMVVARYVYYATIFTIITATSSFV 1233


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 470 QLITYDRKKFRRMRLHCFIDFAVKYYLYVKRSKT 571
           +++TY   K+R++   C    A + +L V + +T
Sbjct: 515 KIVTYKGGKYRKVTFQCLKSIAWRAFLAVLKRRT 548


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 340 LCEHLPTANTWFHRSSEPIRTYLKYRNIIVYPFAYFVPKIGFLIVISLFN 191
           + E +PT +     S++    Y+   NI    FAY   K    I+I  F+
Sbjct: 358 ISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMIQGFS 407


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 340 LCEHLPTANTWFHRSSEPIRTYLKYRNIIVYPFAYFVPKIGFLIVISLFN 191
           + E +PT +     S++    Y+   NI    FAY   K    I+I  F+
Sbjct: 358 ISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMIQGFS 407


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 340 LCEHLPTANTWFHRSSEPIRTYLKYRNIIVYPFAYFVPKIGFLIVISLFN 191
           + E +PT +     S++    Y+   NI    FAY   K    I+I  F+
Sbjct: 358 ISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMIQGFS 407


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 340 LCEHLPTANTWFHRSSEPIRTYLKYRNIIVYPFAYFVPKIGFLIVISLFN 191
           + E +PT +     S++    Y+   NI    FAY   K    I+I  F+
Sbjct: 358 ISEIIPTGDDTTMDSNDMTAIYVLLINIFASYFAYIFGKFACKIMIQGFS 407


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 531 LLSNITYMSNDRKRSLAPICLL 596
           LL+N+TY + +RK     +C L
Sbjct: 42  LLTNLTYNNTNRKYYWLNVCCL 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,442
Number of Sequences: 336
Number of extensions: 3688
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)