Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m18r
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    28   1.3  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   4.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.2  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   9.2  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 357 DIFFYDCASTCPLPIPGFIDQVN 289
           DIFF +C     LPIP  I+QVN
Sbjct: 641 DIFFNNCFKNGMLPIPTPIEQVN 663


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 274 SRYVWVHLIYETRYWQWASARTIIEKYIS 360
           + Y+W  LI E+ ++ + S ++ I KY++
Sbjct: 114 AEYIWKSLIPESIFYHFVSLQSFIRKYLT 142


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +3

Query: 72  NVNNTFANF*ESEGKIINV*KLRILSEVPVKNINYWNSFKLNRLMTI 212
           + N  +AN+ E++   I++ KL    ++P+   ++ + FK+N L+ I
Sbjct: 420 HTNERYANYCEAKTATISLSKLLRREKIPLLVSSFESLFKMNALLFI 466


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 424  PLVTSLCHLLVLRLQIKRTFIKRYIFL*LCEHLPTANTWFHRS 296
            PL+  L   L    ++  + +K  I + LC+ LPT   W H S
Sbjct: 1225 PLLNLLVSFLRKPNRLVPSNVKSNILVLLCKLLPTNTKWLHAS 1267


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 254 CIPFCLFCTQDWIFDCH*P 198
           C+PF L  +Q  +F CH P
Sbjct: 121 CVPFLLLASQMILFYCHFP 139


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 713 HNCTYSNLTHFLISSG 760
           HN TY+NL ++L+ SG
Sbjct: 229 HNQTYTNLINYLLGSG 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,968
Number of Sequences: 5004
Number of extensions: 56363
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)