Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m18r
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)         29   3.2  
SB_46406| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)                 29   5.5  
SB_56725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  
SB_43117| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 28   9.7  

>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
          Length = 823

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 164 FYRYLT*YSQFLDIYNFSFTFLKVCECIIYIV 69
           FY+  T Y  +LD++N  FTF+   E ++ ++
Sbjct: 203 FYQEPTLYRYYLDLFNSIFTFMFTAEALLKLI 234


>SB_46406| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)
          Length = 319

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 340 LCEHLPTANTWFHRSSEPIRTYLKYRNIIVYPFAYFVPKI-GFLIVISLFNL 188
           LC+   + +T FH        Y+K RN + Y +     +I G L+++ LF+L
Sbjct: 103 LCQRFLSISTIFHLVVATGERYVKIRNPLKYKYVATSSRILGVLVLVWLFSL 154


>SB_56725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 262 YDILSRYVWVHLIYETRYWQW 324
           YD+L+ Y W   ++  RYW W
Sbjct: 61  YDVLAGYKWHLGLHTCRYWVW 81


>SB_43117| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 385

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 262 YDILSRYVWVHLIYETRYWQW 324
           YD+L+ Y W   ++  RYW W
Sbjct: 242 YDVLAGYKWHLGLHTCRYWVW 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,128
Number of Sequences: 59808
Number of extensions: 356026
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)