Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m18f
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 33 0.20
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0) 31 0.79
SB_27883| Best HMM Match : TrbF (HMM E-Value=1.5) 31 1.0
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 31 1.0
SB_37311| Best HMM Match : Lysis_S (HMM E-Value=4.3) 29 2.4
SB_3090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17) 29 4.2
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_50987| Best HMM Match : DUF1012 (HMM E-Value=0.58) 28 5.6
SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19) 28 5.6
SB_40099| Best HMM Match : GRP (HMM E-Value=1.5) 28 5.6
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_13015| Best HMM Match : rve (HMM E-Value=0.00017) 28 5.6
SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9) 28 7.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31) 27 9.7
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12) 27 9.7
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025) 27 9.7
SB_10109| Best HMM Match : PA (HMM E-Value=0.0067) 27 9.7
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 169 RPSQPDRPRQWSPCSKFRPPSRARAGTASS 80
+P QPD+ + WSPC + P + A T+++
Sbjct: 279 QPRQPDQGQSWSPCMVCKTPGKVAAATSAT 308
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 169 RPSQPDRPRQWSPCSKFRPPSRARAGTASS 80
+P QPD+ + WS C + P + A T+++
Sbjct: 171 QPRQPDQGQSWSTCMVCKTPGKVAAATSAT 200
>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
Length = 576
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 247 EMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLD---LVQRNTDVL 417
E+ DL+ G + IQ T T G + ++T+G + +GE+ L V+ N D L
Sbjct: 294 ELSDLEDGGVYSLEEGIQIRTVEMHTGGEPLRIITSGYPEIKGETILQKRRFVRDNLDYL 353
Query: 418 KQII 429
++++
Sbjct: 354 RKML 357
>SB_27883| Best HMM Match : TrbF (HMM E-Value=1.5)
Length = 389
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 106 RARAGTASSGTPSCGSVSVPWDWSRSAWS 20
RARA A++GT S G P S SAWS
Sbjct: 92 RARADDATAGTASAGITHTPAPESNSAWS 120
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 106 RARAGTASSGTPSCGSVSVPWDWSRSAWS 20
RARA A++GT S G P S SAWS
Sbjct: 1277 RARADDAAAGTASAGITHTPAPESNSAWS 1305
>SB_37311| Best HMM Match : Lysis_S (HMM E-Value=4.3)
Length = 231
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 145 RQWSPCSKFRPPSRA--RAGTASSGTPSCGSVSVPWDWSRSAWS 20
R+W R +RA RA AS+GT S G P S SAW+
Sbjct: 78 RRWPRGRASRRDARACARADDASAGTASAGITHTPAPESNSAWT 121
>SB_3090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 247 EMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLD---LVQRNTDVL 417
E+ DL+ G IQ T T G + ++T+G + +GE+ L V+ N D L
Sbjct: 3 ELSDLEDGGVHSLEEGIQIRTVEMHTGGEPLRIITSGYPEIKGETILQKRRFVRDNLDYL 62
Query: 418 KQII 429
++++
Sbjct: 63 RKML 66
>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 1693
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1
Query: 103 ARAGTASSGTPSCGSVSVPWDWSRSAWS 20
A AGTAS+GTP S P S SAWS
Sbjct: 1301 AAAGTASAGTP---SAHTPVPGSNSAWS 1325
>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 207 HRSSRHDG*QIERRDDGPAARISIHEERQDPI*YGLF 317
H SS HD +ER+ P + ++E++D + LF
Sbjct: 468 HSSSGHDSPSLERKSHPPDHELPAYKEKEDQVIPSLF 504
>SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 127 SKFRPPSRARAGTASSGTPSCG--SVSVPWDWSRSAWS 20
S+ R RARA A++GT S G S P S SAWS
Sbjct: 337 SQGREGLRARAEDAAAGTASAGTPSAHTPVPESNSAWS 374
>SB_50987| Best HMM Match : DUF1012 (HMM E-Value=0.58)
Length = 873
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 460 ILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLL--SDRLGIATTSCHGYI 633
+LVI + VD L T+++ G+ H+V GS L S +R L+ S+++G ++ H +
Sbjct: 612 LLVITLHKVDSLASTTYRLLGITPHKV-GS---LASTTYRLLVINSNKVGRPASTTHRLL 667
Query: 634 I 636
+
Sbjct: 668 V 668
>SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 722
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 127 SKFRPPSRARAGTASSGTPSCG--SVSVPWDWSRSAWS 20
S+ R RARA A++GT S G S P S SAWS
Sbjct: 337 SQGREGLRARAEDAAAGTASAGTPSAHTPVPESNSAWS 374
>SB_40099| Best HMM Match : GRP (HMM E-Value=1.5)
Length = 80
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 42 SHGTLTEPQDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGR 170
+ G +G E A A A G R + G +C G G DGR
Sbjct: 34 AEGAAEAAAEGAAEMAAEAAAENGSR--DSGGNCGGNCGRDGR 74
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 166 PSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSVS 53
P + P Q P P AR+G+ GTPS G V+
Sbjct: 253 PKKTITPAQVKPSPPPTKPKPARSGSVDHGTPSPGKVT 290
>SB_13015| Best HMM Match : rve (HMM E-Value=0.00017)
Length = 960
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -1
Query: 103 ARAGTASSGTPSCGSVSVPWDWSRSAWS 20
A AGTAS+GTP S P S SAWS
Sbjct: 638 AAAGTASAGTP---SAHTPVPESNSAWS 662
>SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9)
Length = 253
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 151 RPRQWSPCSKFRPPSRARAGTASSGTPSCGSVSVPWDWSRSAWS 20
R R + CS+ P RA A + P S P S SAWS
Sbjct: 120 RKRHFVSCSRRWPRGRASRRDARACAPMMPSAHTPVPESNSAWS 163
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 256 PSSLLSICQPSCLLERC 206
PSS L CQPSC +E C
Sbjct: 1906 PSSCLLACQPSCPMECC 1922
>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
Length = 1283
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 472 ASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSDRLGIATTSCHGY 630
++N + L ++ + GLP+H+V +G+ S F+ L + TT+ G+
Sbjct: 984 SANTISALRHI-FSHFGLPEHQVSDNGSQFTSDEFQKFLRSNDILHTTTARGH 1035
>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
Length = 863
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 443 STVRTQYW*SPVTPWIF*RMLRGRLAGCPSTASSGPALTWTRHGSV 580
S YW T W F L+G T+ + L W RHG +
Sbjct: 376 SNTLVPYWVPQGTLWSFTGYLKGHSGPLLGTSRNTLVLYWVRHGKL 421
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 386 RRDSPSRCRTPAVTTQIFEPAVIE*SVLDWILAFLMNADPC-CRSIISPFNLSAIMSTRA 210
R+ +P CR A ++ V+ V ++ PC CR + S +++ +MS
Sbjct: 390 RQCAPCLCRYVASVYHVY---VVMSPVCTMFMSLCRQCAPCLCRHVASVYHVYVVMSPVC 446
Query: 209 MLFVTFC 189
+F++ C
Sbjct: 447 TMFMSSC 453
>SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025)
Length = 435
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 277 FMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQI---IPQLIKY 447
F+R K+Q T +I++ S + V + + +DL + + + QI +P +Y
Sbjct: 148 FLRRKKLQILT--TISSESNVEEVVTELSASVHDVDIDLAKESIHAIGQIALVVPSAAEY 205
Query: 448 SPDTILVIASNPVDILTYVT 507
S DT+L S ++ ++ T
Sbjct: 206 SIDTLLSFLSYEIEYISAKT 225
>SB_10109| Best HMM Match : PA (HMM E-Value=0.0067)
Length = 354
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 106 EKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMAD 234
E + ETW + V +V S T+N TN L+D D
Sbjct: 140 ENISETWKNLGFGSVKKVKYNVLLSFPTKNKTNGAMLLDGNGD 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,133,507
Number of Sequences: 59808
Number of extensions: 467699
Number of successful extensions: 1510
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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