Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m14r
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    29   0.052
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    26   0.37 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      24   1.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.4  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 356 LANILSLVALKLQHLAVLRVLHDRTVARELLLACPH 463
           L +I   VAL ++HLA  RV+H    AR +L+   H
Sbjct: 594 LLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENH 629


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -3

Query: 181 KENTVVRALCLATSSVV*NIVNLIYYRRRLVS*VAK 74
           K    + ALC+ T+ V  + +++IYYR+ + + +++
Sbjct: 25  KTRAKIYALCVVTALVTPSALSIIYYRQPIYAKISE 60


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 170 GC-PRPVPCDFLCCIKYCKSYILSPPSRL 87
           GC P+P+P     CI  C SYI    S++
Sbjct: 54  GCVPKPIPS--FACIGRCASYIQVSGSKI 80


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 243 RVVIINPIKNMYLESTDVYR 184
           R ++  PI N Y E+  VYR
Sbjct: 767 RGILFVPIPNKYYEAKQVYR 786


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,031
Number of Sequences: 336
Number of extensions: 3652
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)