Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m14r
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 130 1e-30
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 124 6e-29
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 113 2e-25
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 112 2e-25
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 36 0.045
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 5.2
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 28 6.9
01_01_0381 - 2961422-2963917 28 9.1
>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 130 bits (314), Expect = 1e-30
Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
Frame = -3
Query: 631 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 461
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LTTVQGL E+ KI+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787
Query: 460 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 302
+ KKEF CNGTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 788 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 124 bits (300), Expect = 6e-29
Identities = 58/104 (55%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Frame = -3
Query: 604 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 434
DPFA+A + + G VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Query: 433 NGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 302
NGTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 62 NGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 113 bits (271), Expect = 2e-25
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = -3
Query: 631 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 461
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LTTVQGL EY KI+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62
Query: 460 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 332
+ KKEF CNGTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 63 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 112 bits (270), Expect = 2e-25
Identities = 47/83 (56%), Positives = 64/83 (77%)
Frame = -3
Query: 550 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 371
VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E CNG VVE E G+++QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557
Query: 370 ENICQWLTKSGLVKPEQLKVHGF 302
++ +L K+G+V+ + +KVHGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 35.5 bits (78), Expect = 0.045
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -3
Query: 529 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 353
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174
Query: 352 LTKSGLVKPE 323
+T + PE
Sbjct: 175 ITDTWPDVPE 184
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 680 VVSQRFVETKRPYVQSYVHPESQHI 606
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +2
Query: 407 LRVLHD-RTVARELLLACPHDL 469
LR+LHD + VAR++L A PHDL
Sbjct: 564 LRMLHDGKWVARKVLGAVPHDL 585
>01_01_0381 - 2961422-2963917
Length = 831
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 499 QGLSSEYDLKKIVRACKKEFAC-NGTVVEHPEYGEVLQL 386
Q L E DLK++ R CK C V+ P G+V+Q+
Sbjct: 751 QKLCGEADLKEVERVCKIGCWCIQEDEVDRPTMGQVVQI 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,315
Number of Sequences: 37544
Number of extensions: 398999
Number of successful extensions: 1011
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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