Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m14f
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 130 9e-31
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 124 4e-29
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 113 1e-25
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 112 2e-25
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513... 36 0.034
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 3.9
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 28 5.2
01_01_0381 - 2961422-2963917 28 6.8
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 9.0
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 9.0
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 27 9.0
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 27 9.0
>07_03_0685 - 20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 130 bits (314), Expect = 9e-31
Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 288
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LTTVQGL E+ KI+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787
Query: 289 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 447
+ KKEF CNGTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 788 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 124 bits (300), Expect = 4e-29
Identities = 58/104 (55%), Positives = 76/104 (73%), Gaps = 3/104 (2%)
Frame = +1
Query: 145 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 315
DPFA+A + + G VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Query: 316 NGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 447
NGTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 62 NGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 113 bits (271), Expect = 1e-25
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +1
Query: 118 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 288
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LTTVQGL EY KI+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62
Query: 289 RACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 417
+ KKEF CNGTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 63 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 112 bits (270), Expect = 2e-25
Identities = 47/83 (56%), Positives = 64/83 (77%)
Frame = +1
Query: 199 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQR 378
VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E CNG VVE E G+++QLQGD R
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHR 557
Query: 379 ENICQWLTKSGLVKPEQLKVHGF 447
++ +L K+G+V+ + +KVHGF
Sbjct: 558 NSVSDFLAKAGMVRKDNIKVHGF 580
>01_01_0671 -
5137787-5137843,5138420-5138503,5138595-5138662,
5138854-5138935,5139282-5139346,5139504-5139747
Length = 199
Score = 35.5 bits (78), Expect = 0.034
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 220 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 396
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 115 RNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEF 174
Query: 397 LTKSGLVKPE 426
+T + PE
Sbjct: 175 ITDTWPDVPE 184
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 69 VVSQRFVETKRPYVQSYVHPESQHI 143
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -2
Query: 342 LRVLHD-RTVARELLLACPHDL 280
LR+LHD + VAR++L A PHDL
Sbjct: 564 LRMLHDGKWVARKVLGAVPHDL 585
>01_01_0381 - 2961422-2963917
Length = 831
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 250 QGLSSEYDLKKIVRACKKEFAC-NGTVVEHPEYGEVLQL 363
Q L E DLK++ R CK C V+ P G+V+Q+
Sbjct: 751 QKLCGEADLKEVERVCKIGCWCIQEDEVDRPTMGQVVQI 789
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 133 LNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTL--TTVQGLSS 264
LN+ PF D +KS++D ++ L H R + N + TT GL++
Sbjct: 975 LNSTKPFEDVVKSAQDSLR-WLCHKRFLEWNNETKIYSTTPLGLAA 1019
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 164 IASANGSNVLRFWMDIRLNVGSL 96
IA++N VLR WMD++ NV L
Sbjct: 440 IAASNHMEVLRRWMDLQRNVNVL 462
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 144 ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 49
+C+E + H I+ VS F +L T Y C
Sbjct: 676 KCIECIPQHAIQFIVSTFYGQVVMLSTHPYGC 707
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 144 ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 49
+C+E + H I+ VS F +L T Y C
Sbjct: 715 KCIECIPQHAIQFIVSTFYGQVVMLSTHPYGC 746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,748,562
Number of Sequences: 37544
Number of extensions: 342004
Number of successful extensions: 912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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