Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m14f
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   3.0  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    28   7.0  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.0  
SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score =  138 bits (335), Expect = 3e-33
 Identities = 65/103 (63%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
 Frame = +1

Query: 148 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 318
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541

Query: 319 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 447
           GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+KVHGF
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -3

Query: 419 FTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVV 240
           +TK +L  H +I +   P  C   PY  C     +  N  +HART     +++ERP    
Sbjct: 583 YTKTELRQHVRIHTGEKPYKC---PY--CDKAFAVKGNCTVHART-----HTKERPYKCT 632

Query: 239 SVLRPFRC 216
           +  R F C
Sbjct: 633 NCGRAFSC 640


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 349  EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 489
            +VL+    QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 87  VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 257
           VE +   V+  +  ES    +IR   RC+Q    +R+  F  RP+P T+   D     RP
Sbjct: 49  VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 332 STTVPLHA---NSFLHART--IFFRSYSEERPCTVVSVLRPFRC 216
           STTV +H    N+ LH R   I+ R+Y+ + P   +S   P RC
Sbjct: 254 STTVAVHKDARNADLHTRVTLIYRRAYNADLPTRTMSEGAPMRC 297


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 144  ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 49
            +C+E +D H ++  +  FQ     L T  Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212


>SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 254 PCTVVSVLRPFRCWIRTWTKP 192
           P + + +  P +CW R W KP
Sbjct: 161 PRSRIPLKNPLKCWYRNWLKP 181


>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 164 IASANGSNVLRFWMDIRLNVGSLCFNETLRYYALNNITVTDNALL 30
           +A  +G      W D+     SL FN +L   AL ++TV D   L
Sbjct: 734 VAVLDGWGFGTIWCDVLAVTVSLSFNASLVTLALQSVTVNDTRAL 778


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,764,749
Number of Sequences: 59808
Number of extensions: 410461
Number of successful extensions: 2488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2488
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)