Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m14f
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   134   6e-32
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical ...    28   6.1  
AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRN...    28   6.1  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  134 bits (323), Expect = 6e-32
 Identities = 65/112 (58%), Positives = 84/112 (75%), Gaps = 2/112 (1%)
 Frame = +1

Query: 118 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 291
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 292 ACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 447
             KK+ +CNGT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHGF
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 103 PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 249
           PTFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>AC024201-6|AAF36016.1|  183|Caenorhabditis elegans Hypothetical
           protein Y71F9B.3 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 211 IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENIC 390
           ++Q+ G K L  V G+     L  ++     +  CN     +P Y  +  ++   +E+  
Sbjct: 31  VEQKTGVKRLHLVLGVVGLQALY-LIFGHSAQLVCNFMGFVYPAYMSIKAIESSNKEDDT 89

Query: 391 QWLT 402
           QWLT
Sbjct: 90  QWLT 93


>Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical
           protein F47B10.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 450 LETVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 346
           L+ + L L R H  G+GEPLA      L+AL++  LA
Sbjct: 199 LKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 317  LHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 192
            L  +SF+ A T+F RS  E+RP  V  + +    +  + ++P
Sbjct: 1417 LDKDSFIQAITVFIRSLVEQRPAWVSPLAKTMEEYANSESEP 1458


>AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical
           protein T06A1.4 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 76  RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 255
           ++V +   DP F  ++ Q L  FD    A++    DVQ     ++   +  R+ ++ + G
Sbjct: 83  QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142


>AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 133 LNTFDP-FADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR--ACKK 303
           + T DP   +A++     +QD   ++     +G  ++T    +  E  +KKIV   A K 
Sbjct: 79  IRTTDPAHLEAVQHFWMKIQDN-GYIYKSTYSGYYSITDECFIPEEDVVKKIVEGGAEKL 137

Query: 304 EFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 417
               NGT VE  E    +    + RE + +W+ +  +V
Sbjct: 138 TLKSNGTPVEWIEEENYMFRLSEFREKVAEWINRENIV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,133,083
Number of Sequences: 27780
Number of extensions: 291779
Number of successful extensions: 800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)