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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m13r
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical p...   138   4e-33
Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical pr...   138   4e-33
Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical pr...   138   5e-33
X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin pr...   138   5e-33
U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory ...   138   5e-33
Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical pr...   137   6e-33
Z78200-11|CAB01587.2|  426|Caenorhabditis elegans Hypothetical p...    96   2e-20
Z78198-13|CAB01575.2|  426|Caenorhabditis elegans Hypothetical p...    96   2e-20
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    69   3e-12
U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha ...    66   3e-11
Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical p...    65   4e-11
Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical pr...    65   4e-11
Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical p...    65   4e-11
D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin...    65   4e-11
D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin...    65   4e-11
AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical ...    65   4e-11
Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical pr...    65   5e-11
AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin...    65   5e-11
Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical pr...    64   1e-10
U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin M...    64   1e-10
D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin...    64   1e-10
AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensor...    64   1e-10
AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin...    64   1e-10
AL023832-1|CAA19475.1|   85|Caenorhabditis elegans Hypothetical ...    62   4e-10
Z37140-7|CAA85497.2|  452|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    33   0.27 
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical
           protein K01G5.7 protein.
          Length = 449

 Score =  138 bits (334), Expect = 4e-33
 Identities = 63/65 (96%), Positives = 65/65 (100%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LKMAATF+GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+S
Sbjct: 361 LKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLIS 420

Query: 535 EYQQY 521
           EYQQY
Sbjct: 421 EYQQY 425


>Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical
           protein C36E8.5 protein.
          Length = 450

 Score =  138 bits (334), Expect = 4e-33
 Identities = 63/65 (96%), Positives = 65/65 (100%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LKMAATF+GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+S
Sbjct: 361 LKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLIS 420

Query: 535 EYQQY 521
           EYQQY
Sbjct: 421 EYQQY 425


>Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical
           protein C54C6.2 protein.
          Length = 444

 Score =  138 bits (333), Expect = 5e-33
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 535 EYQQY 521
           EYQQY
Sbjct: 421 EYQQY 425


>X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin
           protein.
          Length = 441

 Score =  138 bits (333), Expect = 5e-33
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 535 EYQQY 521
           EYQQY
Sbjct: 421 EYQQY 425


>U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory
           abnormality protein7 protein.
          Length = 441

 Score =  138 bits (333), Expect = 5e-33
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 535 EYQQY 521
           EYQQY
Sbjct: 421 EYQQY 425


>Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical
           protein B0272.1 protein.
          Length = 444

 Score =  137 bits (332), Expect = 6e-33
 Identities = 63/65 (96%), Positives = 65/65 (100%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           +KMAATF+GNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 VKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420

Query: 535 EYQQY 521
           EYQQY
Sbjct: 421 EYQQY 425


>Z78200-11|CAB01587.2|  426|Caenorhabditis elegans Hypothetical
           protein T04H1.9 protein.
          Length = 426

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 45/65 (69%), Positives = 54/65 (83%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LK +ATFI NSTAIQE  KRIS+QF  +FRRKAFLHWYT   M+E EFT+AE+ +NDL+S
Sbjct: 359 LKTSATFIANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---MEESEFTDAENKVNDLIS 415

Query: 535 EYQQY 521
           E+QQY
Sbjct: 416 EFQQY 420


>Z78198-13|CAB01575.2|  426|Caenorhabditis elegans Hypothetical
           protein T04H1.9 protein.
          Length = 426

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 45/65 (69%), Positives = 54/65 (83%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           LK +ATFI NSTAIQE  KRIS+QF  +FRRKAFLHWYT   M+E EFT+AE+ +NDL+S
Sbjct: 359 LKTSATFIANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---MEESEFTDAENKVNDLIS 415

Query: 535 EYQQY 521
           E+QQY
Sbjct: 416 EFQQY 420


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 28/64 (43%), Positives = 44/64 (68%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           L+ A   + N+TAIQE + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  
Sbjct: 371 LQRAVCMLSNTTAIQEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 430

Query: 535 EYQQ 524
           +Y++
Sbjct: 431 DYEE 434


>U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha
           protein 9 protein.
          Length = 456

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 26/64 (40%), Positives = 43/64 (67%)
 Frame = -2

Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
           L+ A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  
Sbjct: 376 LQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 435

Query: 535 EYQQ 524
           +Y++
Sbjct: 436 DYEE 439


>Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical
           protein C47B2.3 protein.
          Length = 448

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431

Query: 526 Q 524
           +
Sbjct: 432 E 432


>Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical
           protein F26E4.8 protein.
          Length = 449

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431

Query: 526 Q 524
           +
Sbjct: 432 E 432


>Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431

Query: 526 Q 524
           +
Sbjct: 432 E 432


>D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin
           protein.
          Length = 449

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431

Query: 526 Q 524
           +
Sbjct: 432 E 432


>D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin
           protein.
          Length = 448

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431

Query: 526 Q 524
           +
Sbjct: 432 E 432


>AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/61 (42%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y+
Sbjct: 372 AVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYE 431

Query: 526 Q 524
           +
Sbjct: 432 E 432


>Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical
           protein F32H2.9 protein.
          Length = 464

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 26/57 (45%), Positives = 40/57 (70%)
 Frame = -2

Query: 694 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 524
           I N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct: 384 ISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 440


>AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin
           (tba-6) protein.
          Length = 435

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 26/57 (45%), Positives = 40/57 (70%)
 Frame = -2

Query: 694 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 524
           I N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct: 356 ISNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 412


>Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical
           protein T28D6.2 protein.
          Length = 444

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/61 (40%), Positives = 42/61 (68%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E ++R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 369 AVCMLSNTTAIAEAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 428

Query: 526 Q 524
           +
Sbjct: 429 E 429


>U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin
           MEC-12 protein.
          Length = 450

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433

Query: 526 Q 524
           +
Sbjct: 434 E 434


>D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin
           protein.
          Length = 449

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 373 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 432

Query: 526 Q 524
           +
Sbjct: 433 E 433


>AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensory
           abnormality protein12 protein.
          Length = 450

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433

Query: 526 Q 524
           +
Sbjct: 434 E 434


>AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin
           (tba-3) protein.
          Length = 450

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y+
Sbjct: 374 AVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 433

Query: 526 Q 524
           +
Sbjct: 434 E 434


>AL023832-1|CAA19475.1|   85|Caenorhabditis elegans Hypothetical
           protein Y19D2B.1 protein.
          Length = 85

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 24/57 (42%), Positives = 40/57 (70%)
 Frame = -2

Query: 694 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 524
           + ++TAI E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y++
Sbjct: 13  LSDTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 69


>Z37140-7|CAA85497.2|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.4 protein.
          Length = 452

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 24/61 (39%), Positives = 39/61 (63%)
 Frame = -2

Query: 706 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 527
           A   + N+TAI E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++  L  +Y 
Sbjct: 377 AVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYA 436

Query: 526 Q 524
           +
Sbjct: 437 E 437


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 159 CFCCTYVNKKCLF*ISLYKFQI*LSTRPGGISRNVLNRLCSFK*FVITGSLVVLS---VK 329
           CF C ++    +F I +Y FQ  +  +  G+ +N +  L  +K +VI   +   S   + 
Sbjct: 59  CFTCEWLGN--VFLIDVYDFQPSILVKINGVLKNYIRPLNLYKVYVIVEGITETSGLILF 116

Query: 330 S*KACLILTLYRNHYGYSNKM 392
           + +  LI+ LYR H     K+
Sbjct: 117 TSRVLLIVDLYRPHPSIQRKI 137


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 180 LHMCSRNKMADQNSIPTNADSTQTPVPFCFCCTECIKFGCCHERQTFNCDGFSNRSF 10
           LHM +R +    +   TN     T +   FCC+E + +G       F   G+++R F
Sbjct: 253 LHMTARIRKNISSDKSTNTSKLLTLMACSFCCSETL-YGSFFFADRFMLYGYNDRRF 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,621
Number of Sequences: 27780
Number of extensions: 281754
Number of successful extensions: 820
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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