Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m13r
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 134 6e-32
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 134 6e-32
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 134 6e-32
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 134 6e-32
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 134 7e-32
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 133 1e-31
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 133 1e-31
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 133 1e-31
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 132 2e-31
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 69 3e-12
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 69 3e-12
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 69 3e-12
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 69 3e-12
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 69 3e-12
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 69 3e-12
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 29 2.3
At5g40540.1 68418.m04920 protein kinase, putative similar to pro... 29 4.1
At5g40600.1 68418.m04928 hypothetical protein 27 9.4
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 134 bits (324), Expect = 6e-32
Identities = 60/65 (92%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 134 bits (324), Expect = 6e-32
Identities = 60/65 (92%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 134 bits (324), Expect = 6e-32
Identities = 60/65 (92%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 134 bits (324), Expect = 6e-32
Identities = 60/65 (92%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 134 bits (323), Expect = 7e-32
Identities = 59/65 (90%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMAATF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+
Sbjct: 362 LKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 421
Query: 535 EYQQY 521
EYQQY
Sbjct: 422 EYQQY 426
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 133 bits (321), Expect = 1e-31
Identities = 59/65 (90%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 133 bits (321), Expect = 1e-31
Identities = 59/65 (90%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
LKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+
Sbjct: 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVA 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 133 bits (321), Expect = 1e-31
Identities = 58/65 (89%), Positives = 65/65 (100%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 362 IKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 421
Query: 535 EYQQY 521
EYQQY
Sbjct: 422 EYQQY 426
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 132 bits (319), Expect = 2e-31
Identities = 59/65 (90%), Positives = 64/65 (98%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
L MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 535 EYQQY 521
EYQQY
Sbjct: 421 EYQQY 425
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 535 EYQQ 524
+Y++
Sbjct: 431 DYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 535 EYQQ 524
+Y++
Sbjct: 431 DYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 535 EYQQ 524
+Y++
Sbjct: 431 DYEE 434
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 535 EYQQ 524
+Y++
Sbjct: 431 DYEE 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 535 EYQQ 524
+Y++
Sbjct: 431 DYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 68.9 bits (161), Expect = 3e-12
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = -2
Query: 715 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 536
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 535 EYQQ 524
+Y++
Sbjct: 431 DYEE 434
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 44 VWRSWQHPNFIHSVQQKQNGTGVCVESALVGI 139
+W PN ++S+QQ +N T V V + G+
Sbjct: 338 LWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGV 369
>At5g40540.1 68418.m04920 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 353
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -3
Query: 171 CSRNKMADQNSIPTNADSTQTPVP---FCFCC 85
CS + D++ IPT+A+S Q V F FCC
Sbjct: 322 CSLMTVRDKDQIPTDANSAQNEVRGSFFFFCC 353
>At5g40600.1 68418.m04928 hypothetical protein
Length = 306
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 252 IFHQASLRARSEICKG*SKIDTFYLHMCSRNKMADQNSIPTNADSTQTPVPFC 94
+ Q L + E+ + S++D+ YL NK ++++PTNA+S P C
Sbjct: 148 LLRQCVLNSIPEVDEMQSRVDSMYLMSQLSNKK--RSTLPTNAESVIPEDPRC 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,746
Number of Sequences: 28952
Number of extensions: 249627
Number of successful extensions: 671
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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