Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m12r
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   189   2e-49
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.5  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   1.9  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   3.4  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   3.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.5  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   7.8  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  189 bits (461), Expect = 2e-49
 Identities = 85/148 (57%), Positives = 109/148 (73%)
 Frame = -2

Query: 487 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 308
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 307 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 128
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 127 SAKKEIGLWFTDKEVVGWTPANENWVYE 44
           SA +EI LWF   E+  +    E W+YE
Sbjct: 124 SANREIKLWFQPSEIQVYDRTIEPWIYE 151


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 356 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 529
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 83  NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 259
           N FV  P       R +  RT+   TP+L  E  ++    R+S V C   H  +S  N  
Sbjct: 5   NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62

Query: 260 ALPYHRDHR 286
           ++   R H+
Sbjct: 63  SVRNTRTHK 71


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 402 KPFFSKRSIMVPTRPRCTPSGLT 470
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = -2

Query: 310 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 146
           L++     P++  V  GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 210 AGLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 329
           +G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 358 SGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -2

Query: 280 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 113
           +  V EG N +  GRQ+L  T+P           + + +G  I     H SD +   + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447

Query: 112 IGLWFTDKEV 83
               F+  E+
Sbjct: 448 SAFGFSAMEL 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,368
Number of Sequences: 5004
Number of extensions: 46325
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)