Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m11r
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 2.1
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.8
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 27 3.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.4
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 6.4
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 6.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.5
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.5
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 613 IWDKKVRNGHIKRITDNDIQSLVLE-IVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKN 437
I +K + +G + + N +Q++ + G+NV+ + I+C ++ G ++P +V K+
Sbjct: 920 IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVS-GKS 978
Query: 436 LKKYFTFEVQVLDDKNVRRRF 374
L + +E + RF
Sbjct: 979 LPSFVPYETSAKSGGFIASRF 999
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = -1
Query: 388 VRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYG--TNYVETLRVQI 215
+RRRF A++ Q VKP+ + + DE W + +R G + +E ++ +
Sbjct: 685 LRRRFHATSEQVENCVKPYKYDVEVNDDE-WKSSRGQAEKLLQRELGLCQSALEKIKNAV 743
Query: 214 HANCRIRRV--YFSDRLYSEDELPAEFKLFL 128
+ R+ +V Y ++ S + LPA + L
Sbjct: 744 GSR-RMNQVLQYLEEQKTSSEPLPASYSTAL 773
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 269 VSQVELYLVPAFVQPHGHSTDERLNPCCRLVV 364
VSQV ++VP + P H+ ER CC+ +
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWVER---CCKKAI 378
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/79 (20%), Positives = 33/79 (41%)
Frame = -1
Query: 373 RASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIR 194
++ + T PF + E +Q +AD++R+ Y Y T+ + C+
Sbjct: 691 QSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIADYSRKVYHRLYDNTVIERETIICQKE 750
Query: 193 RVYFSDRLYSEDELPAEFK 137
++ D + S + +FK
Sbjct: 751 NSFYIDTVKSFRDRRYDFK 769
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 513 VVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 614
++L F P I+ T + L++I C L F+S++
Sbjct: 114 LILLFSPYIAITSMARLLTLITLFCSLVCFISEV 147
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 433 LNFLLS*PKKVTLFQGSSLDPPGMLC 510
LN LLS PK L Q S+LD +C
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVC 145
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 167 IQSVGEINSSYSAVCMYLDS*GLNIVSAVSSSCEVSQVELYLVPAFVQPHGHSTDERLN 343
++ + + N +YS + + I S +SS + S + YL+P + H S + RL+
Sbjct: 423 VEPIEDCNEAYSLSSKFHFKKEILIASQLSSHLDYSTFKNYLMPLAITLHFISEELRLD 481
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 604 CPKFAKVCCLCCKESIGNQ 660
CP F K CLC K + NQ
Sbjct: 671 CPYFVKKRCLCGKHILENQ 689
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 533 HDFEHQALYIVICYPLYVPIANFFVPNLQRFAAYAVKNR*ETRLKSILEHFCFS 694
H + L+++ CY L +AN+ V R + E I E+F FS
Sbjct: 405 HVLPIRQLFLLNCYSLLNVLANYVVVFKDRLIFQEINQNWEEHKGQIPENFIFS 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,053
Number of Sequences: 5004
Number of extensions: 57581
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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