Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11r
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052...   327   5e-90
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    30   2.2  
01_01_0614 + 4574914-4575023,4575044-4575155                           29   3.8  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    28   6.7  
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256...    28   8.8  

>09_04_0692 +
           19502878-19502920,19505011-19505104,19505196-19505227,
           19505833-19506074,19506758-19506994,19508283-19508396
          Length = 253

 Score =  327 bits (804), Expect = 5e-90
 Identities = 145/182 (79%), Positives = 168/182 (92%)
 Frame = -1

Query: 664 QSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPK 485
           QSGFLSILYS+G+KPLQIWDK+V +GHIKR  D DIQS VLEI+GTNV +TYITCPADP 
Sbjct: 35  QSGFLSILYSLGTKPLQIWDKEVVDGHIKRPQDEDIQSNVLEIIGTNVQSTYITCPADPA 94

Query: 484 KTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD 305
            TLGIKLPFL +I+KNLKKYFTFE+QVLDDKNVRRRFRASN+QS TRVKP+ICTMP++L+
Sbjct: 95  ATLGIKLPFLALIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQSVTRVKPYICTMPLKLE 154

Query: 304 EGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLFLP 125
           +GWN IQ NL+D T+RAYGTNYVETLRVQ+HANCR+RR+YF+DRLYSE+ELP EFKL+LP
Sbjct: 155 DGWNNIQLNLSDLTKRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLP 214

Query: 124 IQ 119
           IQ
Sbjct: 215 IQ 216


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -1

Query: 652 LSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLG 473
           L +  ++  K   I+D       +K+I   D+  L++++ G+    TYI C +   KT G
Sbjct: 61  LELKVAVLRKLAAIYDNCAVYKKLKKILKKDLSDLIVQLNGSEWMETYIVCYSRCVKTAG 120


>01_01_0614 + 4574914-4575023,4575044-4575155
          Length = 73

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 489 GSAGHVMYVVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 614
           GS    +Y   T+ PT + TR  IS SVI    PLR + S I
Sbjct: 3   GSTTTTIYAT-TYKPTYAKTRRRISTSVIGMAIPLRRYKSAI 43


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 557  TKPGARNRGNERQYHVHNMPGG--SKEDPWNKVTFFGYD 447
            TK  +RN  ++   + +N PGG  S  D W+ V+ F +D
Sbjct: 1394 TKLSSRNVADKGPVNAYNFPGGFDSFLDQWSTVSEFSFD 1432


>03_01_0330 +
           2566662-2566740,2566821-2566911,2567003-2567057,
           2567166-2567297,2567517-2567567,2567769-2567840,
           2568590-2568680,2568988-2569066,2569147-2569210,
           2569917-2570020,2570182-2570287,2572080-2572157,
           2572649-2572801,2573039-2573128,2573284-2573349,
           2573485-2573583,2573660-2573734,2574455-2574514,
           2574909-2574998,2575202-2575323,2575462-2575591,
           2575662-2575741,2576167-2576302,2577005-2577086,
           2578475-2578620,2578796-2578876,2578994-2579094,
           2579770-2580008,2580100-2580209,2580518-2580646,
           2580728-2580802,2581455-2581586,2582298-2582470,
           2582566-2582688,2582771-2582831,2582910-2583005,
           2583251-2583351,2584014-2584119,2584673-2584786,
           2584888-2584962,2585619-2585711,2585883-2585954,
           2586253-2586338,2586434-2586527,2586596-2586703,
           2586782-2587021
          Length = 1579

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 185 INSSYSA-VCMYLDS*GLNIVSAVSSSCEVSQVELYLVPAFVQPHGHSTDERLN 343
           I+S+Y   +CM+L    LN++  ++S C +S     L   F+  H   TD+ LN
Sbjct: 320 ISSAYPEDLCMFL----LNLIVVMASHCYLSGHPAELAVEFLVRHSAITDDDLN 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,630
Number of Sequences: 37544
Number of extensions: 333678
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)