Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11r
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)                      233   1e-61
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      53   3e-07
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.97 
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    31   0.97 
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   30   1.7  
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)                      29   3.0  
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.0  
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 28   9.0  

>SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 195

 Score =  233 bits (569), Expect = 1e-61
 Identities = 105/112 (93%), Positives = 111/112 (99%)
 Frame = -1

Query: 451 MIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLA 272
           MIIKNLKKYFTFEVQVLDDKNV+RRFRASNYQSTTRVKPFICTMPMRLD+GWNQIQFNL+
Sbjct: 1   MIIKNLKKYFTFEVQVLDDKNVKRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLS 60

Query: 271 DFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLFLPIQN 116
           DFTRRAYGTNY+ETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKL+LP+ N
Sbjct: 61  DFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPMNN 112


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
 Frame = -1

Query: 655 FLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTL 476
           F+ +  + G  P+  W         K+I D D++S V  + G + +TT ++ P D K++L
Sbjct: 11  FVEVFSAQGRDPVSKWRLCGNASTAKKIFDRDVKSYVFILEGES-TTTKMSIPKDEKQSL 69

Query: 475 GIKLPFLVM-IIKNLKKYFTFEVQVLD-DKNVRRRFRASNYQSTTRVKPFICTMPMR-LD 305
            +   +L++ +   L   F+FE+ + D   N RR F +S+++  T V P     P+  L 
Sbjct: 70  FLIQKYLILQLFVPLGHSFSFELGITDMGNNKRRIFMSSSHREVT-VTPLHARFPLSILR 128

Query: 304 EG-WNQIQFNLADFTRRAYGTNYVETLR-VQIHANCRIRRVY 185
            G W  +  +L       +     + L  + + ANC +R+++
Sbjct: 129 LGVWLNLCLDLNSLVGETFKGQAFKVLESLTVSANCHLRKIF 170


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 233  LNIVSAVSSSCEVSQVELYLVPAFVQ-PHGHSTDERLNPCCRLVVAGSKSSTYVFVI--K 403
            + +  A SSSCE++ + L   P  V    G+   +    C   +++G K S Y ++   K
Sbjct: 1026 IKMFDAHSSSCELNPLPLMYTPVAVSYRSGYQEPKSRESCLHHLLSGQKHSGYYWITPSK 1085

Query: 404  HLNFKSEILF 433
            H + KS +++
Sbjct: 1086 HHSRKSMLVY 1095


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 568 DNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNL-KKYFTFEVQVLDDK 392
           D   +  V  I+G+  +  YI  P    +TLG+   ++  + K +  KYF   + V  + 
Sbjct: 1   DKQTKGTVYRIIGSIPAGNYIQFPCTSSQTLGLTGRYIYFMFKPIPTKYFVVHLDVATED 60

Query: 391 NVRRRFRASN 362
            +  R   SN
Sbjct: 61  GLAVRVSFSN 70


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 571 LSSLCAHCELFCPKFAKVCCLC 636
           +   C HCEL  P F+K C LC
Sbjct: 223 VEEFCYHCELVAPIFSKHCRLC 244


>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
          Length = 367

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 328 CTMPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIRRVYFSD 176
           C +P+  DEGW + QFN+   T   Y T Y  T+ V I    +  R  F D
Sbjct: 300 CDIPV--DEGWLESQFNIYLST---YWTGYRTTMGVDIEEAWKCHRCDFVD 345


>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = -1

Query: 568 DNDIQSLVLEIVG-TNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDK 392
           + D++  + E+    N  TT     + P KT+G   P     + + +   T    +    
Sbjct: 27  EEDVRQTLFELERYLNTGTTQNDVASQPAKTIGSVAP-----LDSARAVTTSSDCLYSMS 81

Query: 391 NVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRA 254
           N  ++   ++ +   R +P   ++P+R D+   Q    L DF++R+
Sbjct: 82  NAAQKSFPTSSEQYFRYQPNDASLPVRFDQPCGQFTEALKDFSKRS 127


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = -3

Query: 653 PIDSLQHRQQTFANLGQKSSQWAHKEDNR*RYTKPGARNRGNERQYHVHNMPGGSKE 483
           P+D+ Q R     N GQ+  Q   +++N  +Y +   + + + +Q   +  PGG ++
Sbjct: 500 PVDAGQPRPTQAPNSGQQQQQQQQQQENNQQYNQGNQQQQQDSQQ---NRQPGGQQQ 553


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 356  LVVAGSKSSTYVFVIKHLNFKSEILF 433
            L+V G  +++ V VI+H +F + ILF
Sbjct: 1323 LIVCGENATSDVIVIRHADFPNRILF 1348


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/93 (24%), Positives = 39/93 (41%)
 Frame = -1

Query: 580 KRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVL 401
           +++ +   + +V E V  N +T  I    D KK   IK+     I K +  +      V 
Sbjct: 6   RKVAEKGRRDIVNEHVHAN-NTRAIFRKLDYKKETSIKIYSATNITKRMPLFVDITADVK 64

Query: 400 DDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 302
            +K+  R    SN      +K  IC  P+R ++
Sbjct: 65  GEKSKARVPVVSNAHLYYPIKYAICVPPLRSEK 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,430
Number of Sequences: 59808
Number of extensions: 401854
Number of successful extensions: 1120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)