Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11r
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77131-4|CAD66219.1|  203|Caenorhabditis elegans Hypothetical pr...   335   2e-92
Z81542-4|CAB04418.1|  233|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF025450-1|AAB70937.1|  321|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z77131-4|CAD66219.1|  203|Caenorhabditis elegans Hypothetical
           protein C54C6.6 protein.
          Length = 203

 Score =  335 bits (823), Expect = 2e-92
 Identities = 144/182 (79%), Positives = 170/182 (93%)
 Frame = -1

Query: 664 QSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPK 485
           QSG LS+LYSIGSKPLQIWD +++NGH+KRITD +IQSLVLEI+G N+ST +I+CP DP 
Sbjct: 7   QSGLLSVLYSIGSKPLQIWDTQIKNGHVKRITDEEIQSLVLEIMGNNISTAFISCPVDPD 66

Query: 484 KTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD 305
           KTLGIKLPF VM++KN+ KYF+FEVQ++DDK ++RRFRASNYQS TRVKPFICTMPMR+D
Sbjct: 67  KTLGIKLPFFVMVVKNMNKYFSFEVQIIDDKKIKRRFRASNYQSATRVKPFICTMPMRMD 126

Query: 304 EGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLFLP 125
           EGWNQIQFNL+DF +RAYGTNYVETLR+QIHANCRIRRVYF+DRLY+EDELPAEFKL+LP
Sbjct: 127 EGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIRRVYFADRLYTEDELPAEFKLYLP 186

Query: 124 IQ 119
           I+
Sbjct: 187 IR 188


>Z81542-4|CAB04418.1|  233|Caenorhabditis elegans Hypothetical
           protein F49A5.6 protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 EVSQVELYLVPAFVQPHGHSTDERLNPC 349
           +VS V+ Y +P F+QPHG S   R   C
Sbjct: 117 DVSMVDGYNIPVFIQPHGVSGCHRAGGC 144


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +2

Query: 245 SAVSSSCEVSQVELYLVPAFVQPHGHSTDERLNPCCRLVVAGSKSSTYVFVIKHLNFKSE 424
           S++ SSC   + EL ++   +   G + +ER N    L+    K++ YV V +  ++K+ 
Sbjct: 185 SSLKSSCHRLEKELKVITESIDKLGKAVEERHN---LLIGLMKKATVYVLVPRVTSWKT- 240

Query: 425 ILF*IFY 445
           I+F +F+
Sbjct: 241 IIFFVFW 247


>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical protein
            F20G4.1 protein.
          Length = 1615

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 455  QKR*LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIVICYPLYVPIAN 598
            QK   Y K  LW        G DV    + H++  + +C+ L+ P  N
Sbjct: 1213 QKITFYGKRNLWETNYGKREGFDVMKRLYAHESSTVALCFSLFEPAEN 1260


>AF025450-1|AAB70937.1|  321|Caenorhabditis elegans Hypothetical
           protein C41H7.6 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 572 NR*RYTKPGARNRGNERQYHVHNMPGGSKE 483
           +R R  +P A N+GN+ +YHV  +P   +E
Sbjct: 182 DRTREAQP-AENQGNQEEYHVEEVPYAQEE 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,859
Number of Sequences: 27780
Number of extensions: 322409
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)