Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11r
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12300.1 68416.m01535 expressed protein                            323   6e-89
At5g54210.1 68418.m06753 NLI interacting factor (NIF) family pro...    35   0.064
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    31   1.0  
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    29   2.4  
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ...    29   4.2  
At1g05150.1 68414.m00518 calcium-binding EF hand family protein ...    29   4.2  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    28   7.4  
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila...    27   9.8  
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro...    27   9.8  
At1g73600.2 68414.m08520 phosphoethanolamine N-methyltransferase...    27   9.8  
At1g73600.1 68414.m08521 phosphoethanolamine N-methyltransferase...    27   9.8  

>At3g12300.1 68416.m01535 expressed protein
          Length = 190

 Score =  323 bits (794), Expect = 6e-89
 Identities = 140/182 (76%), Positives = 169/182 (92%)
 Frame = -1

Query: 664 QSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPK 485
           QSGFLSILYS+GSKPLQIWDK+V +GH+KR  D+DIQS VLE+VG+N+ +TYITCPAD  
Sbjct: 7   QSGFLSILYSLGSKPLQIWDKEVVDGHVKRCHDDDIQSNVLEVVGSNIQSTYITCPADLS 66

Query: 484 KTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD 305
            TLGIKLPFLV+++K++KKYF+FE+Q+LDDKNVRRRFRASN+Q+ TRVKP+ICTMP+++D
Sbjct: 67  ATLGIKLPFLVLVVKDMKKYFSFEIQILDDKNVRRRFRASNFQAVTRVKPYICTMPLKMD 126

Query: 304 EGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLFLP 125
           EGWNQIQ NLAD TRRAYGTNY ETLRVQIHANCR+RR+YF+DRLYSE+ELP EFKL+LP
Sbjct: 127 EGWNQIQLNLADLTRRAYGTNYAETLRVQIHANCRLRRIYFADRLYSEEELPPEFKLYLP 186

Query: 124 IQ 119
           +Q
Sbjct: 187 VQ 188


>At5g54210.1 68418.m06753 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 306

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
 Frame = -1

Query: 586 HIKRITDNDIQSLVLEIVGTNVS---TTYITCPADPKKTLGIKLPFLVM---IIKNLKKY 425
           H  R  D  +  L L  +   V+   TT ITC  D K  L + L   ++   +I NL K 
Sbjct: 52  HRGRSFDYLVDGLQLSDIAVTVTKRVTTQITCFNDKKLHLVLDLDHTLLHTVMISNLTKE 111

Query: 424 FTFEVQVLDDKNVRRRFRAS-NYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYG 248
            T+ ++  D +   RR     + +   +++PF+       ++ ++   + + D   R Y 
Sbjct: 112 ETYLIEEEDSREDLRRLNGGYSSEFLIKLRPFVHEFLKEANKMFSMYVYTMGD---RDYA 168

Query: 247 TNYVETLRVQIHANCRIRRVYFSDRLYSEDELP 149
            N +  +  +        +VYF DR+ + +E P
Sbjct: 169 MNVLNLIDPE--------KVYFGDRVITRNESP 193


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 560 YTKPGARNRGNERQYHVHNMPGGSKED 480
           Y KPGA NRG  R+ H +N PG ++ D
Sbjct: 296 YAKPGAENRGMGRR-HSYNNPGINESD 321


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 574 SSLCA-HCELFCPKFAKVCCLCCKESI 651
           S +C  H    C K  K+CCLCC  ++
Sbjct: 63  SYICMWHSCYLCKKTPKLCCLCCSHAV 89


>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
           GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 802

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 467 LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIV 565
           L+ + L+  +RAC ++ TDVR H      LY++
Sbjct: 244 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVL 276


>At1g05150.1 68414.m00518 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
            GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 808

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 467 LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIV 565
           L+ + L+  +RAC ++ TDVR H      LY++
Sbjct: 249 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVL 281


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 305 VQPHGHSTDERLNPCCRLVVAGSKSSTYVFVIKHLN 412
           ++ +G    +RL+ C  + VAG  ++T V  I HLN
Sbjct: 165 IEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLN 200


>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 767

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 237 T*LVP*ALRVKSAKLNCIWFQPSSNLMGIVQMNGLTLVVDW 359
           T +VP +L+V S+  +    + +S L GI   +GL L V W
Sbjct: 279 TSIVPASLKVTSSSSSSSRTEVASILQGICSSHGLPLAVTW 319


>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 296

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -1

Query: 247 TNYVETLRVQIHANCRIR-----RVYFSDRLYSEDELP 149
           T YV T+  +++A   ++     R+YF DR+ + DE P
Sbjct: 151 TMYVYTMGTRVYAESLLKLIDPKRIYFGDRVITRDESP 188


>At1g73600.2 68414.m08520 phosphoethanolamine N-methyltransferase 3,
           putative (NMT3) strong similarity to SP|Q9FR44
           Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103)
           (PEAMT 1) (AtNMT1) {Arabidopsis thaliana}; identical to
           SP|Q9C6B9 Putative phosphoethanolamine
           N-methyltransferase 3 {Arabidopsis thaliana}
          Length = 376

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  LNCLSCCCYFGFILNWKEQFELCW 151
           L+ +SC C   ++ N K Q ++CW
Sbjct: 214 LSLVSCKCIGAYVRNKKNQNQICW 237


>At1g73600.1 68414.m08521 phosphoethanolamine N-methyltransferase 3,
           putative (NMT3) strong similarity to SP|Q9FR44
           Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103)
           (PEAMT 1) (AtNMT1) {Arabidopsis thaliana}; identical to
           SP|Q9C6B9 Putative phosphoethanolamine
           N-methyltransferase 3 {Arabidopsis thaliana}
          Length = 555

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  LNCLSCCCYFGFILNWKEQFELCW 151
           L+ +SC C   ++ N K Q ++CW
Sbjct: 265 LSLVSCKCIGAYVRNKKNQNQICW 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,903
Number of Sequences: 28952
Number of extensions: 289415
Number of successful extensions: 769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)