Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   1.6  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   2.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.9  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   4.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.4  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   8.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.5  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +2

Query: 215  IWDKKVRNGHIKRITDNDIQSLVLE-IVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKN 391
            I +K + +G + +   N +Q++ +    G+NV+ + I+C    ++  G ++P +V   K+
Sbjct: 920  IINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVS-GKS 978

Query: 392  LKKYFTFEVQVLDDKNVRRRF 454
            L  +  +E        +  RF
Sbjct: 979  LPSFVPYETSAKSGGFIASRF 999


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 559 VSQVELYLVPAFVQPHGHSTDERLNPCCRLVV 464
           VSQV  ++VP  + P  H+  ER   CC+  +
Sbjct: 350 VSQVNFHIVPFIMDPTSHNWVER---CCKKAI 378


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 315 VVLTFVPTISSTRLCISLSVILFMCPLRTFLSQI 214
           ++L F P I+ T +   L++I   C L  F+S++
Sbjct: 114 LILLFSPYIAITSMARLLTLITLFCSLVCFISEV 147


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 395 LNFLLS*PKKVTLFQGSSLDPPGMLC 318
           LN LLS PK   L Q S+LD    +C
Sbjct: 120 LNSLLSDPKSSPLMQSSTLDGVSSVC 145


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 224 CPKFAKVCCLCCKESIGNQ 168
           CP F K  CLC K  + NQ
Sbjct: 671 CPYFVKKRCLCGKHILENQ 689


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 295 HDFEHQALYIVICYPLYVPIANFFVPNLQRFAAYAVKNR*ETRLKSILEHFCFS 134
           H    + L+++ CY L   +AN+ V    R     +    E     I E+F FS
Sbjct: 405 HVLPIRQLFLLNCYSLLNVLANYVVVFKDRLIFQEINQNWEEHKGQIPENFIFS 458


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 257 LSSLCAHCELFCPKFAKVCCLCCKESIGNQTEKY 156
           L S C HC +  PK  KV  L  K  I N+   Y
Sbjct: 118 LYSSCMHCSIMSPKLQKV-MLAQKSLILNKVFDY 150


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 193 HRQQTFANLGQKSSQWAHKEDNR*RYTK 276
           H + TF  L Q+  +W     NR RY++
Sbjct: 455 HAKSTFKQLDQELYEWEKNLPNRLRYSR 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,887
Number of Sequences: 5004
Number of extensions: 47365
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)