Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11f
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)                      161   4e-40
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)                      47   1e-05
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    31   0.72 
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   30   1.3  
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   6.7  
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 28   6.7  
SB_13242| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               27   8.8  

>SB_7460| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 195

 Score =  161 bits (391), Expect = 4e-40
 Identities = 72/76 (94%), Positives = 76/76 (100%)
 Frame = +2

Query: 377 MIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLA 556
           MIIKNLKKYFTFEVQVLDDKNV+RRFRASNYQSTTRVKPFICTMPMRLD+GWNQIQFNL+
Sbjct: 1   MIIKNLKKYFTFEVQVLDDKNVKRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLS 60

Query: 557 DFTRRAYGTNYVETLR 604
           DFTRRAYGTNY+ETLR
Sbjct: 61  DFTRRAYGTNYIETLR 76


>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
          Length = 2074

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
 Frame = +2

Query: 173 FLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTL 352
           F+ +  + G  P+  W         K+I D D++S V  + G + +TT ++ P D K++L
Sbjct: 11  FVEVFSAQGRDPVSKWRLCGNASTAKKIFDRDVKSYVFILEGES-TTTKMSIPKDEKQSL 69

Query: 353 GIKLPFLVM-IIKNLKKYFTFEVQVLD-DKNVRRRFRASNYQSTTRVKPFICTMPMRL 520
            +   +L++ +   L   F+FE+ + D   N RR F +S+++  T V P     P+ +
Sbjct: 70  FLIQKYLILQLFVPLGHSFSFELGITDMGNNKRRIFMSSSHREVT-VTPLHARFPLSI 126


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -1

Query: 595  LNIVSAVSSSCEVSQVELYLVPAFVQ-PHGHSTDERLNPCCRLVVAGSKSSTYVFVI--K 425
            + +  A SSSCE++ + L   P  V    G+   +    C   +++G K S Y ++   K
Sbjct: 1026 IKMFDAHSSSCELNPLPLMYTPVAVSYRSGYQEPKSRESCLHHLLSGQKHSGYYWITPSK 1085

Query: 424  HLNFKSEILF 395
            H + KS +++
Sbjct: 1086 HHSRKSMLVY 1095


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 260 DNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNL-KKYFTFEVQVLDDK 436
           D   +  V  I+G+  +  YI  P    +TLG+   ++  + K +  KYF   + V  + 
Sbjct: 1   DKQTKGTVYRIIGSIPAGNYIQFPCTSSQTLGLTGRYIYFMFKPIPTKYFVVHLDVATED 60

Query: 437 NVRRRFRASN 466
            +  R   SN
Sbjct: 61  GLAVRVSFSN 70


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 257 LSSLCAHCELFCPKFAKVCCLC 192
           +   C HCEL  P F+K C LC
Sbjct: 223 VEEFCYHCELVAPIFSKHCRLC 244


>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 260 DNDIQSLVLEIVG-TNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDK 436
           + D++  + E+    N  TT     + P KT+G   P     + + +   T    +    
Sbjct: 27  EEDVRQTLFELERYLNTGTTQNDVASQPAKTIGSVAP-----LDSARAVTTSSDCLYSMS 81

Query: 437 NVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRA 574
           N  ++   ++ +   R +P   ++P+R D+   Q    L DF++R+
Sbjct: 82  NAAQKSFPTSSEQYFRYQPNDASLPVRFDQPCGQFTEALKDFSKRS 127


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 175 PIDSLQHRQQTFANLGQKSSQWAHKEDNR*RYTKPGARNRGNERQYHVHNMPGGSKE 345
           P+D+ Q R     N GQ+  Q   +++N  +Y +   + + + +Q   +  PGG ++
Sbjct: 500 PVDAGQPRPTQAPNSGQQQQQQQQQQENNQQYNQGNQQQQQDSQQ---NRQPGGQQQ 553


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 472  LVVAGSKSSTYVFVIKHLNFKSEILF 395
            L+V G  +++ V VI+H +F + ILF
Sbjct: 1323 LIVCGENATSDVIVIRHADFPNRILF 1348


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/93 (24%), Positives = 39/93 (41%)
 Frame = +2

Query: 248 KRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVL 427
           +++ +   + +V E V  N +T  I    D KK   IK+     I K +  +      V 
Sbjct: 6   RKVAEKGRRDIVNEHVHAN-NTRAIFRKLDYKKETSIKIYSATNITKRMPLFVDITADVK 64

Query: 428 DDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE 526
            +K+  R    SN      +K  IC  P+R ++
Sbjct: 65  GEKSKARVPVVSNAHLYYPIKYAICVPPLRSEK 97


>SB_13242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 511 GHSTDERLNPCCRLVVAGSKSSTYVFVIKHLNF-KSEILF*IFYYHNQKR*LYSK 350
           GHS  E ++   R +  GSK   Y+ ++  +   K   +F +FY       LY +
Sbjct: 89  GHSETELVDAVIRAIAPGSKLKGYLEIVSDVTLPKLRQIFRVFYQEKTGTELYQE 143


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 407 TFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT-MPMRLDEG 529
           T E  + ++K+ R+++   + + T    PFICT + M   EG
Sbjct: 455 TCETALREEKDKRKKYYVDHCRRTHNYDPFICTFLTMLAQEG 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,902
Number of Sequences: 59808
Number of extensions: 334828
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)