Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m11f
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12300.1 68416.m01535 expressed protein                            257   4e-69
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    31   0.78 
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    29   1.8  
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ...    29   3.1  
At1g05150.1 68414.m00518 calcium-binding EF hand family protein ...    29   3.1  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    28   5.5  
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila...    27   7.2  
At3g23685.1 68416.m02978 F-box family protein contains TIGR01640...    27   9.6  
At1g14140.1 68414.m01671 mitochondrial substrate carrier family ...    27   9.6  

>At3g12300.1 68416.m01535 expressed protein
          Length = 190

 Score =  257 bits (630), Expect = 4e-69
 Identities = 112/147 (76%), Positives = 135/147 (91%)
 Frame = +2

Query: 164 QSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPK 343
           QSGFLSILYS+GSKPLQIWDK+V +GH+KR  D+DIQS VLE+VG+N+ +TYITCPAD  
Sbjct: 7   QSGFLSILYSLGSKPLQIWDKEVVDGHVKRCHDDDIQSNVLEVVGSNIQSTYITCPADLS 66

Query: 344 KTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD 523
            TLGIKLPFLV+++K++KKYF+FE+Q+LDDKNVRRRFRASN+Q+ TRVKP+ICTMP+++D
Sbjct: 67  ATLGIKLPFLVLVVKDMKKYFSFEIQILDDKNVRRRFRASNFQAVTRVKPYICTMPLKMD 126

Query: 524 EGWNQIQFNLADFTRRAYGTNYVETLR 604
           EGWNQIQ NLAD TRRAYGTNY ETLR
Sbjct: 127 EGWNQIQLNLADLTRRAYGTNYAETLR 153


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 268 YTKPGARNRGNERQYHVHNMPGGSKED 348
           Y KPGA NRG  R+ H +N PG ++ D
Sbjct: 296 YAKPGAENRGMGRR-HSYNNPGINESD 321


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 254 SSLCA-HCELFCPKFAKVCCLCCKESI 177
           S +C  H    C K  K+CCLCC  ++
Sbjct: 63  SYICMWHSCYLCKKTPKLCCLCCSHAV 89


>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
           GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 802

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 361 LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIV 263
           L+ + L+  +RAC ++ TDVR H      LY++
Sbjct: 244 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVL 276


>At1g05150.1 68414.m00518 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
            GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 808

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 361 LYSKGLLWIRRACYVRGTDVRSHDFEHQALYIV 263
           L+ + L+  +RAC ++ TDVR H      LY++
Sbjct: 249 LFKEALVSFKRACELQPTDVRPHFKAGNCLYVL 281


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 523 VQPHGHSTDERLNPCCRLVVAGSKSSTYVFVIKHLN 416
           ++ +G    +RL+ C  + VAG  ++T V  I HLN
Sbjct: 165 IEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLN 200


>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 767

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 591 T*LVP*ALRVKSAKLNCIWFQPSSNLMGIVQMNGLTLVVDW 469
           T +VP +L+V S+  +    + +S L GI   +GL L V W
Sbjct: 279 TSIVPASLKVTSSSSSSSRTEVASILQGICSSHGLPLAVTW 319


>At3g23685.1 68416.m02978 F-box family protein contains TIGR01640:
           F-box protein interaction domain
          Length = 330

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +2

Query: 242 HIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQ 421
           HI +    + +S ++ ++G N+S T I    DP      KLP L   +K + +++  E  
Sbjct: 2   HIGQAAAKEGESQMIVMMGNNLSLTSIILNGDPSIEHKGKLPCLDEQVK-ISQFYHCEGL 60

Query: 422 VLDDKNVRRRFRASN-YQSTTR-VKPFICTMPMRLDEGWNQIQFNL 553
           +L       RF   N Y   TR ++P     P     GW++  + L
Sbjct: 61  LLCILKDDSRFVVCNPYLEQTRWIEPRYSHRP----HGWDRFSYAL 102


>At1g14140.1 68414.m01671 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 305

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 248 KRITDNDIQSLVLEIVGTNVSTTYITCPADPKKT 349
           K+I +++I +  L  + + +++T ++CPAD  KT
Sbjct: 208 KKIAEDNIFAHTLASIMSGLASTSLSCPADVVKT 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,052
Number of Sequences: 28952
Number of extensions: 239386
Number of successful extensions: 652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)