Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m07r
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 96 2e-20
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 95 4e-20
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 30 0.98
At5g02840.2 68418.m00227 myb family transcription factor contain... 29 1.7
At5g02840.1 68418.m00226 myb family transcription factor contain... 29 1.7
At1g01520.1 68414.m00068 myb family transcription factor similar... 29 1.7
At5g15890.1 68418.m01859 expressed protein 29 3.0
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 4.0
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 4.0
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 28 5.2
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 27 6.9
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 6.9
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 6.9
At1g02290.1 68414.m00171 expressed protein 27 6.9
At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 27 9.1
At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4) f... 27 9.1
At4g34950.1 68417.m04954 nodulin family protein similar to nodul... 27 9.1
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 27 9.1
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/119 (42%), Positives = 73/119 (61%)
Frame = -2
Query: 532 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 353
M F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58
Query: 352 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 176
+ +++ +A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 94.7 bits (225), Expect = 4e-20
Identities = 50/119 (42%), Positives = 71/119 (59%)
Frame = -2
Query: 532 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 353
M F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58
Query: 352 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 176
+ + + +A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 59 VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
nodule inception protein [Lotus japonicus] GI:6448579;
contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 30.3 bits (65), Expect = 0.98
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Frame = -2
Query: 529 PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 356
P+ + P + L + P L ++ DV + R D GS R ++N + T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693
Query: 355 FRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWA----QKLANKE---------KRAQMTD 215
FRL P+R V A D+ + K + WA Q A+ K D
Sbjct: 694 FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751
Query: 214 YDRFKLTAARVKRNRARTAVFKSLKVKAA 128
RFK++ V + V K LK++ A
Sbjct: 752 IIRFKISPESVSITELKQQVAKRLKLETA 780
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 331 APTRLVRKAWTDAKLNEKWTESQ 263
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 331 APTRLVRKAWTDAKLNEKWTESQ 263
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 337 FTAPTRLVRKAWTDAKLNEKWTESQ 263
F PT+ VRK +T K E WTE +
Sbjct: 44 FEDPTKKVRKPYTITKSRENWTEQE 68
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 408 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 506
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 514 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 362
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = -2
Query: 340 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 161
AF VRK + + + ++++ E+RA+ T + + + T + +
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750
Query: 160 AVFKSLKVKAARAGTFGKKNI 98
FK+LK + A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -2
Query: 382 RLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 203
R + +H K RL+ A PT + D L + S + +E A + DY RF
Sbjct: 64 RSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSSSVRVGETGFREVAAYLLDYGRF 123
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 444 TSTTLTNFPFKGPSATRATRPGSTYRAKGMTFLQRLNTNN 563
T+ T T PS+ A + + ++ +FLQR N NN
Sbjct: 69 TANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNN 108
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 514 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 362
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 514 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 362
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 413 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSCEESV 303
T Q S T+P+ P+H +P +RV S YS E+++
Sbjct: 326 TTQRSIQGTEPVFHDPTHTVPSALRV-SNYSITEQNI 361
>At5g51150.1 68418.m06342 expressed protein similar to unknown
protein (gb|AAD46013.1)
Length = 531
Score = 27.1 bits (57), Expect = 9.1
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +3
Query: 231 RFSLFANFWAH*LSVHFSLSLASV-HAFLTRRVGAVNAYLRRNFVRWS--------WFKR 383
+F L+ + W H S+ FSL+ A V ++F+ R +Y R F++ + R
Sbjct: 205 KFHLWGSHWRHGDSLLFSLACAQVMYSFIMRPETLPKSY--REFIQKTGPVARPVYQAVR 262
Query: 384 ICCLGTPLPGPSTSARVWS 440
CC G P+ S SA + S
Sbjct: 263 ECCRGGPIDVASLSAYISS 281
>At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 138
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 564 HCLC*DVVRTSCLLHGT 514
HCLC V SCLLH T
Sbjct: 96 HCLCLPHVHMSCLLHET 112
>At4g34950.1 68417.m04954 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 567
Score = 27.1 bits (57), Expect = 9.1
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 45 AGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNL-S*SV 221
A FLV V F +FFL ++P F + A F + V + L S +
Sbjct: 175 ASFLVLLSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDI 234
Query: 222 ICARFSLFANFWAH*LSVHFSLSLA-SVHAFLTRRV 326
I + F+ +A L + + +A HAF+ +V
Sbjct: 235 IGIKTGAFSIAFASILLILLASPVAVPFHAFIRSKV 270
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 463 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA 329
L ++D I T +D + +PR+Q+++ + + KF+ + F A
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDA 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,071
Number of Sequences: 28952
Number of extensions: 249190
Number of successful extensions: 740
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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