Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m06r
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.7  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 280 SEETLSYISCSNGSFSRLL 224
           +EET+ Y+   +G+FSRL+
Sbjct: 172 AEETVDYMLEKSGNFSRLV 190


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +2

Query: 260 VAKRFFRASTLSSDLFIKASPVTSSVIGF 346
           +AKR +   T+ +  + + + + S ++GF
Sbjct: 472 IAKRLWLGETIEAKTYPEVTMLFSDIVGF 500


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -3

Query: 381 GRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLAT 259
           GRS+ +  HP  K    D     ++   ++  + +  R A+
Sbjct: 195 GRSFIDYVHPKDKATLADQIKNGIVSPQEERPKGINGRRAS 235


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 348 KKPMTDDVTGEALIKRSDDNVEALKKRL 265
           ++P+T+  TG+ L+    D V A K ++
Sbjct: 715 QEPVTNRPTGQLLLDYLTDTVLAYKPKI 742


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -3

Query: 381 GRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLAT 259
           GRS+ +  HP  K    D     ++   ++  + +  R A+
Sbjct: 190 GRSFIDYVHPKDKATLADQIKNGIVSPQEERPKGINGRRAS 230


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 424 QTVLDSELDYGVQC 465
           Q +LD  LDY + C
Sbjct: 56  QFILDVRLDYRISC 69


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 96  YLN*RSVQILYSVFFSNRTLLISYLC 19
           Y+  R   + Y+V     T+LIS+LC
Sbjct: 226 YIIIRRKTLFYTVNLILPTVLISFLC 251


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 424 QTVLDSELDYGVQC 465
           Q +LD  LDY + C
Sbjct: 24  QFILDVRLDYRISC 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,867
Number of Sequences: 438
Number of extensions: 2066
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)