Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m06f
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...   138   5e-34
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    44   2e-05
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   1.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.8  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score =  138 bits (334), Expect = 5e-34
 Identities = 62/102 (60%), Positives = 80/102 (78%)
 Frame = +3

Query: 6   LDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVE 185
           L+ V+E  ++D LLVRRITGRL+HP SGRSYH EF+PPK PM DDVTGE LI+RSDDN +
Sbjct: 111 LNTVLELQVDDELLVRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNAD 170

Query: 186 ALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKI 311
           AL+KRL TYH QT P+V++Y +KG    VDA++  + V+ +I
Sbjct: 171 ALRKRLVTYHEQTTPVVEFYKKKGKWAAVDAAQKPEQVWEQI 212


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +3

Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVF 302
           RSDDN+E++KKR  TY   ++P+V+Y   +     +DA +  D VF
Sbjct: 135 RSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAVF 180


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 374 LKLTKCTNLIQCFFFEPNITYKLPL*KYSYQFYRLFFLNTTE*NRKK 514
           LK   C ++ + F F+P  T+++P   Y+Y   R+   ++ E   KK
Sbjct: 272 LKPEDCVHVKKLFGFDPTKTFQVPPEVYAYYKERVAIASSAEEEYKK 318


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 378 N*RSVQILYSVFFSNRTLLISYLCENIVINFID 476
           N +S    +  F+S+ TL ISYL ++  + F++
Sbjct: 135 NFKSYNSTHGEFYSDSTLNISYLSDDDTVWFVE 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,236
Number of Sequences: 5004
Number of extensions: 36247
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)