Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10m06f
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0227 + 11934530-11934638,11937206-11937351,11937492-119376... 118 2e-27
12_01_0813 + 7475591-7475693,7476972-7477117,7477205-7477324,747... 116 1e-26
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 56 1e-08
04_01_0026 - 354855-354876,355184-355248,355710-355817,356215-35... 52 3e-07
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56... 52 4e-07
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 49 2e-06
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 45 3e-05
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 44 7e-05
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 40 9e-04
04_04_1543 - 34270578-34270718,34271069-34271341,34271782-342719... 35 0.033
12_02_0346 - 17776871-17781445 31 0.72
12_02_0343 - 17748882-17753396 31 0.72
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 29 2.2
05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975 29 2.9
10_08_0186 - 15582925-15584334 27 6.7
04_04_0056 + 22406872-22407258,22408405-22409310 27 6.7
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 27 6.7
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 27 8.8
>11_03_0227 +
11934530-11934638,11937206-11937351,11937492-11937611,
11937731-11937898,11938534-11938623,11938920-11939018
Length = 243
Score = 118 bits (285), Expect = 2e-27
Identities = 54/105 (51%), Positives = 69/105 (65%)
Frame = +3
Query: 6 LDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVE 185
+D V+ F I+DS+L RITGR IHP SGRSYH +F PPK P DDVTGE LI+R DD E
Sbjct: 137 VDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAE 196
Query: 186 ALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNI 320
LK RL +H QT P++DYY +K L + A K +V ++ +
Sbjct: 197 VLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQKV 241
>12_01_0813 +
7475591-7475693,7476972-7477117,7477205-7477324,
7477445-7477612,7478252-7478341,7478941-7479039
Length = 241
Score = 116 bits (279), Expect = 1e-26
Identities = 52/98 (53%), Positives = 66/98 (67%)
Frame = +3
Query: 6 LDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVE 185
+D V+ F I+D++L RITGR IHP SGRSYH +F PPK P DDVTGE LI+R DD
Sbjct: 135 IDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAA 194
Query: 186 ALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDV 299
LK RL +H QT P++DYY +KG+ + A K +V
Sbjct: 195 VLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEV 232
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 56.4 bits (130), Expect = 1e-08
Identities = 34/109 (31%), Positives = 53/109 (48%)
Frame = +3
Query: 9 DAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEA 188
D I + D LLV R+ GR + P +G+ YH ++ PP+ ++ L +R DD E
Sbjct: 178 DIFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEK 233
Query: 189 LKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFKSRI 335
+K RL T++ L+ Y + + V DDVF +ID S +
Sbjct: 234 VKLRLQTHYQNVESLLSIY--EDVIVEVKGDALVDDVFAEIDKQLTSSL 280
>04_01_0026 -
354855-354876,355184-355248,355710-355817,356215-356295,
356729-356885,356990-357107,357485-357533,357806-357901
Length = 231
Score = 52.0 bits (119), Expect = 3e-07
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +3
Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFKS 329
R DDN+E +KKRL + + +P+VDYY +G +++A+ +++F + +F S
Sbjct: 169 RVDDNIETIKKRLKVFESLNIPVVDYYTSRGKVHKINATGTEEEIFGAVHKLFSS 223
>06_01_0067 +
561910-561987,562698-562759,564293-564338,564701-564758,
564892-565009,565130-565286,565611-565718,565884-565955,
566058-566174,566309-566404
Length = 303
Score = 51.6 bits (118), Expect = 4e-07
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +3
Query: 159 IKRSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 323
I R DDN++ +++R + QT+P++ YY ++G +VD ++ D+VF + IF
Sbjct: 173 IGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKAIF 227
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +3
Query: 30 IEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLAT 209
+ D +L+ R GR + P +G+ YH + PP+ D+V+ L+ RSDD E +K RL T
Sbjct: 226 VPDDILIDRCVGRRLDPETGKIYHIKNFPPE---NDEVSAR-LVTRSDDTFEKVKSRLDT 281
Query: 210 YHAQTVPLVDYY 245
Y + ++ Y
Sbjct: 282 YKQNSEAVIPTY 293
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 323
R DDN+E ++KR + ++P+++YY K ++DA+K +VF + IF
Sbjct: 147 RVDDNIETIRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKPIPEVFEDVKAIF 199
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 44.0 bits (99), Expect = 7e-05
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 323
R DDN+E ++KR + ++P++++Y K ++DA+K +VF + IF
Sbjct: 151 RVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKAIF 203
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 40.3 bits (90), Expect = 9e-04
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +3
Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGL 260
RSDDN+E ++KRL + ++P+++YY KG+
Sbjct: 150 RSDDNIETIRKRLKVFVESSLPVIEYYESKGM 181
>04_04_1543 -
34270578-34270718,34271069-34271341,34271782-34271922,
34272365-34272667
Length = 285
Score = 35.1 bits (77), Expect = 0.033
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 156 LIKRSDDNVEALKKRLATYHAQTVPLVDYYMRKG 257
LI R DD E +K+RL YH P+ D+Y +G
Sbjct: 218 LITRPDDTEEVVKERLRVYHDLCEPVEDFYRARG 251
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 30.7 bits (66), Expect = 0.72
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 335 FQQSTVCFVTLPVLKLTKCTNLI 403
FQQST+CF L +K+++C L+
Sbjct: 969 FQQSTICFPKLQKIKISECPKLL 991
>12_02_0343 - 17748882-17753396
Length = 1504
Score = 30.7 bits (66), Expect = 0.72
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 335 FQQSTVCFVTLPVLKLTKCTNLI 403
FQQST+CF L +K+++C L+
Sbjct: 970 FQQSTICFPKLQEIKISECPKLL 992
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 108 FHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYM 248
F ++ + D V AL K + DNV A+ L ++++ V L D+YM
Sbjct: 374 FAVTQRNLADYVVDLALEKGTTDNVAAVIVPLGSHYSSKVTLEDWYM 420
>05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975
Length = 362
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 98 SRRVPPAEETND*RCHRRSFDKKVRRQCRGSEETLSYIS--CSNGSFSR 238
+R+ PP ND R D VRR+ R S L +IS CS + +R
Sbjct: 103 ARQAPPPAAANDAHQPRPKIDGSVRRRRRRSARALVHISIDCSGPTSAR 151
>10_08_0186 - 15582925-15584334
Length = 469
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 99 HEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYMRKG 257
++ FHPP P+ D L +R + L+ RL +H + PL+ R+G
Sbjct: 80 YQPFHPPPSPLPDKYKDLDLGQR----LAVLRDRLGLWH-EYAPLISALSREG 127
>04_04_0056 + 22406872-22407258,22408405-22409310
Length = 430
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 201 LATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKI 311
+ T+H + DY MR L RV + AA+D F K+
Sbjct: 134 MKTHHESDLSENDYGMRIDLITRVFGANAAEDFFEKL 170
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 108 FHPPKKPMTDDVTGEALIKRSDDNVEAL 191
F PP+ TD++T +++R+DD + A+
Sbjct: 210 FFPPRDSETDNLTWMKIMRRNDDKIIAV 237
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 161 KKVRRQCRGSEETLSYISCSNGSFSRLLHEERST 262
K+ +RQ R EE+ +SC +GS H+ ST
Sbjct: 246 KQKKRQRRKMEESTENLSCRSGSSPSSSHDATST 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,503
Number of Sequences: 37544
Number of extensions: 216970
Number of successful extensions: 622
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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