Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m06f
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)                  146   7e-36
SB_19245| Best HMM Match : ADK (HMM E-Value=0)                         55   3e-08
SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21)               50   1e-06
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)                      44   6e-05
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            44   7e-05
SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)                   40   0.001
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               34   0.060
SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)                    27   9.1  
SB_35619| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)                   27   9.1  

>SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)
          Length = 166

 Score =  146 bits (355), Expect = 7e-36
 Identities = 64/116 (55%), Positives = 86/116 (74%)
 Frame = +3

Query: 6   LDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVE 185
           LDAV+EF I DSLLV+RITGRL+H  SGR+YH EF+PPK+ M DD+TGE L +RSDDN  
Sbjct: 50  LDAVVEFNIADSLLVKRITGRLLHKSSGRTYHTEFNPPKEHMKDDITGEPLERRSDDNEA 109

Query: 186 ALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFKSRIFSRARS 353
            L KRL  YH+QT PL+DYY ++G+H ++DASK  D V++ +   F   +  +++S
Sbjct: 110 TLTKRLQAYHSQTTPLIDYYTKRGIHHKIDASKPPDTVYSSVLKAFDDAVARQSKS 165


>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
          Length = 188

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%)
 Frame = +3

Query: 6   LDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDD 176
           +D V+   +  + +V RI  R +H  SGR Y+ EF+PPK    DD+TGE L +R DD
Sbjct: 131 IDVVVNMDVPFATIVDRIKQRWVHAVSGRVYNLEFNPPKVEGKDDITGEPLTQREDD 187


>SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21)
          Length = 110

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/44 (52%), Positives = 29/44 (65%)
 Frame = +3

Query: 45  LVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDD 176
           +V RI  R +H  SGR Y+ EF+PPK    DD+TGE L +R DD
Sbjct: 8   IVDRIKQRWVHAVSGRVYNLEFNPPKVEGKDDITGEPLTQREDD 51


>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = +3

Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFK 326
           R DDN E +  RL T+  QT+P++++Y  +G   ++ A    D+VF K+  + +
Sbjct: 68  RVDDNEETILSRLETFITQTMPVIEHYQEEGKVKKISAEGGPDEVFKKVSRVLE 121


>SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)
          Length = 336

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 29/107 (27%), Positives = 49/107 (45%)
 Frame = +3

Query: 15  VIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALK 194
           V+   I +  ++ R+T R I P +G  YH  ++PP+     D     L +   D  + + 
Sbjct: 232 VVFMDIPNDTILERLTLRSIDPVTGERYHLIYNPPRSSEVKD----RLQRNKKDQEDEVN 287

Query: 195 KRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFKSRI 335
            R A Y A    + + Y   G H  ++A +    VF  I++I  +RI
Sbjct: 288 DRTAQYQAYIEEIAECYEEIGQH--INADQDIHTVFECIESIIVNRI 332


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +3

Query: 165 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDV 299
           R DDN+E+L+KR  T+   T+P++++Y R+GL   +  +   D++
Sbjct: 61  RPDDNIESLRKRFHTHENSTMPIIEHYRRQGLVKPISGAPTPDEI 105


>SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)
          Length = 712

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 25/92 (27%), Positives = 45/92 (48%)
 Frame = +3

Query: 36  DSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYH 215
           D++L+ R+ G+ + P +G  YH  F PP  P   +V    L+        A+  RL  YH
Sbjct: 196 DTVLIERVMGKRVDPETGDVYHTTFDPPSDP---EVV-RRLVPDPKCTEAAMVGRLMEYH 251

Query: 216 AQTVPLVDYYMRKGLHWRVDASKAADDVFNKI 311
                ++  Y  + ++  V+A +   DVF+++
Sbjct: 252 RHIDGILACY--ENIYKTVNADQPKADVFSQV 281


>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 6   LDAVIEFGIEDSLLVRRITG 65
           LDAV+EF I DSLLV+RITG
Sbjct: 104 LDAVVEFNIADSLLVKRITG 123


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = +3

Query: 75   HPPSGRSYHEEFHPPKKPMTDDVT-GEALIKRSD--DNVEALKKRLATYHAQTVPLVDYY 245
            +P +   YH+EF+PP +     +   E ++  SD  ++ E +++R+  +      L  ++
Sbjct: 1006 NPVTDEQYHQEFNPPVEGSYTGINKQEKVVPVSDPSNDREQVQQRITGFLDAWPKLEKWF 1065

Query: 246  MRKGLHWRVDASKAADDVFNK 308
             + G+  +V+A K+ DD++ +
Sbjct: 1066 SKFGILQKVNADKSQDDLYEE 1086


>SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
 Frame = +3

Query: 69  LIHPPSGRSYHEEFHPPK----KPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLV 236
           ++HP  G +   E HP +     P+  D++    I+  +  VE  K              
Sbjct: 8   MLHPTQGENTLPEPHPDEFAFTAPLKHDMSYSGSIEMQESYVENGKTAGDNGDVGKSIYS 67

Query: 237 DYYMRKGLHWRVDASKAADDVFNK 308
             + RKG  W ++  +  DD FNK
Sbjct: 68  QVFSRKGFEWLLEVDETEDDDFNK 91


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 143 HRRSFDKKVRRQCRGSEETLSYISCSNGSFSRLLHEERSTLARR 274
           HRR   KK++     S++TL Y    +  +S    E R T+AR+
Sbjct: 425 HRRGRSKKIKTGKSKSKKTLDYKKVHDKKWSHQRLESRPTMARK 468


>SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 146 RRSFDKKVRRQCRGSEETLSYISCSNGSFSRLLHEERSTLAR 271
           +RS  K  R+ C   EET       N +   LLHE+RST A+
Sbjct: 573 KRSARKHFRKDC---EETPPRFEACNKNHLTLLHEDRSTPAK 611


>SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)
          Length = 399

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +3

Query: 87  GRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYMRKGLH 263
           G S  + F       T D+T      R  +   A  + + T H+Q+  + +Y  R  +H
Sbjct: 317 GFSLRQSFLTVASSSTQDITTPIRRSRPTEETSAATRTVKTQHSQSKDVFNYKSRAAVH 375


>SB_35619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 68  TDSPT*WS*LSRRVPPAEETND*RCHRRSFDKKVRR 175
           TD PT     + R PPA ET   RC+R S   +  R
Sbjct: 2   TDQPTAQDTNTEREPPAWETTLRRCYRLSATSRTTR 37


>SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)
          Length = 191

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = +3

Query: 87  GRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYMRKGLH 263
           G S  + F       T D+T      R  +   A  + + T H+Q+  + +Y  R  +H
Sbjct: 109 GFSLRQSFLTVASSSTQDITTPIRRSRPTEETSAATRTVKTQHSQSKDVFNYKSRAAVH 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,161,579
Number of Sequences: 59808
Number of extensions: 260751
Number of successful extensions: 739
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)