Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m05r
         (306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    78   1e-15
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    77   3e-15
At3g04890.1 68416.m00531 expressed protein                             28   1.4  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   2.5  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    26   4.3  
At1g73000.1 68414.m08442 hypothetical protein                          26   4.3  
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    26   5.7  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    26   5.7  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    26   5.7  
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    25   7.6  
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    25   7.6  
At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi...    25   7.6  
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi...    25   7.6  
At2g06000.2 68415.m00654 pentatricopeptide (PPR) repeat-containi...    25   7.6  
At2g06000.1 68415.m00653 pentatricopeptide (PPR) repeat-containi...    25   7.6  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 38/81 (46%), Positives = 53/81 (65%)
 Frame = -1

Query: 258 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 79
           M+NDAG+  +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 78  RMGESDDCIVRLTKKDGILAK 16
             G++D  + RL +K  + AK
Sbjct: 60  AQGDADSGVDRLWQKKKVEAK 80


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 38/81 (46%), Positives = 52/81 (64%)
 Frame = -1

Query: 258 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 79
           MQN+ G+  +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 78  RMGESDDCIVRLTKKDGILAK 16
             G++D  + RL +K  + AK
Sbjct: 60  AQGDADSGVDRLWQKKKVEAK 80


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 204 ASNRLIHAKDHASVQLVIADVDPATG-RAADTSKMYVVCGAIRRMGESDDCI 52
           +S  +   KD +  ++   DVD   G   +D    Y V G +     SDDCI
Sbjct: 57  SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 158  SCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV--RPH 277
            +C+  W + W   +  E   G+    NSP S  ILY+  +PH
Sbjct: 4019 ACSIQWDILWNDLVTMELSDGKKDPPNSPPSRLILYLKAKPH 4060


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 92  QTTYILDVSAARPVAGSTSAITSCTE 169
           Q T IL+ +  +P+  STSAIT  TE
Sbjct: 496 QITNILEENVVQPLLVSTSAITLATE 521


>At1g73000.1 68414.m08442 hypothetical protein
          Length = 209

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +2

Query: 35  FFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHF 214
           F  + T++ + + I  I   T   + V +  P + S   +    E   +   R L  EH 
Sbjct: 81  FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHR 140

Query: 215 LGQYKSTNSPASFCIL 262
           L  Y+S  S   F +L
Sbjct: 141 LNNYRSVTSVNEFVVL 156


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 246 AGEFVDLYCPRKCSASNRLIHAKDHASVQLVIAD 145
           AG    L+ P   SA +   +AKD+ S  LVI D
Sbjct: 341 AGPKETLFVPDVSSAGDEATNAKDNQSAPLVIKD 374


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 134 AGSTSAITSCTEAWSLAW 187
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 134 AGSTSAITSCTEAWSLAW 187
           +GS+S+ T C++ W+ +W
Sbjct: 75  SGSSSSSTCCSKGWNFSW 92


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 186 HAKDHASVQLVIADVDPATGRAADTS 109
           HAK+ A+V  ++A +DP TG+    S
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKS 612


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 153 IADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVR 46
           I  + PA GRA    +   V G   RMG S+D +V+
Sbjct: 208 IVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK 243


>At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 836

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 201 WPSISSGSTSQRIHRRRSAFYMYVHTVHGID 293
           W S+  G T   +HR    F+ Y+    GID
Sbjct: 67  WNSMIRGYTRAGLHREALGFFGYMSEEKGID 97


>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
           finger family protein contains Pfam profiles: PF01448
           ELM2 domain, PF00628 PHD-finger
          Length = 631

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -1

Query: 93  CGAIRRMGE-SDDCIVRLTKK 34
           CG  RR G  SDDC+V   KK
Sbjct: 181 CGETRRRGNRSDDCLVYSRKK 201


>At2g06000.2 68415.m00654 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 536

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 122 ARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCIL 262
           ARP+  +T  +  C E    AW+ ++++  F+  Y+  +S   FC L
Sbjct: 23  ARPLQNNTREVIHCPE----AWLVKIVSTLFV--YRVPDSDLCFCYL 63


>At2g06000.1 68415.m00653 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 536

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 122 ARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCIL 262
           ARP+  +T  +  C E    AW+ ++++  F+  Y+  +S   FC L
Sbjct: 23  ARPLQNNTREVIHCPE----AWLVKIVSTLFV--YRVPDSDLCFCYL 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,781,726
Number of Sequences: 28952
Number of extensions: 118390
Number of successful extensions: 327
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)