Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03r
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4MMY0 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_Q6LIM7 Cluster: Putative uncharacterized protein SF2822...    33   8.0  

>UniRef50_Q4MMY0 Cluster: Putative uncharacterized protein; n=1;
           Bacillus cereus G9241|Rep: Putative uncharacterized
           protein - Bacillus cereus G9241
          Length = 200

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 125 FCSEFYMLARKIVPIPIVLKAPLKAYLTCVPSCWIANSKRT 3
           +C   + ++  + P+PI +  PLK  + C PSC I  SK T
Sbjct: 24  YCDNTFAVSETVSPLPICISFPLK-NIPCPPSCTIPASKDT 63


>UniRef50_Q6LIM7 Cluster: Putative uncharacterized protein SF2822;
           n=2; Photobacterium profundum|Rep: Putative
           uncharacterized protein SF2822 - Photobacterium
           profundum (Photobacterium sp. (strain SS9))
          Length = 322

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 321 RVMYCFETYHMYCKTTEHKNTEFF*LLRKEIDLKTVYFFTIFLTHRGH 464
           +++Y    Y+ YC+T   K T F   L KE++++T   F++   +  H
Sbjct: 271 KIIYSPWKYYYYCRTRSDKVTNFIDWLIKELEVETEQLFSLINQYNWH 318


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,245,446
Number of Sequences: 1657284
Number of extensions: 11887348
Number of successful extensions: 26243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26239
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)