Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03r
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.98 
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.7  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   3.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.2  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 322 LKICR*SNSKHSIVITLTNCVYN-VAVSNKYLAQ 224
           ++ICR SN   ++ I L  CV N V++ NK+  Q
Sbjct: 49  IRICRDSNKFDNLAILLQVCVLNIVSIQNKFSEQ 82


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 664 SFGNESRVFMKLINQAIRFSVFFCLFRS 581
           S+ NE  V    IN  IRF +F+  FRS
Sbjct: 49  SYNNEDMVPFSAINLPIRFLIFYNAFRS 76


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 373 TKTRNFSSFYAKKLISKQSISLLFFLHIEAIGFTIILTSIVIRNRID 513
           TK  +  S Y   L+S   + L++   I AIG   I    V+  +ID
Sbjct: 503 TKRSHLRSVYQTTLLSNTDLDLVYDAFINAIGENNICHGDVLEQKID 549


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 396  LLRKEIDLKTVYFFTIFLTHRGHWVYYYFN 485
            LLR EI +K    F       G W YY  N
Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKN 2368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,651
Number of Sequences: 5004
Number of extensions: 57928
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)