BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10m03r (776 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 29 0.98 SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.7 SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.0 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.2 >SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple cancers-1 homolog 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 676 Score = 28.7 bits (61), Expect = 0.98 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -2 Query: 322 LKICR*SNSKHSIVITLTNCVYN-VAVSNKYLAQ 224 ++ICR SN ++ I L CV N V++ NK+ Q Sbjct: 49 IRICRDSNKFDNLAILLQVCVLNIVSIQNKFSEQ 82 >SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 96 Score = 27.9 bits (59), Expect = 1.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 664 SFGNESRVFMKLINQAIRFSVFFCLFRS 581 S+ NE V IN IRF +F+ FRS Sbjct: 49 SYNNEDMVPFSAINLPIRFLIFYNAFRS 76 >SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 720 Score = 27.1 bits (57), Expect = 3.0 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 373 TKTRNFSSFYAKKLISKQSISLLFFLHIEAIGFTIILTSIVIRNRID 513 TK + S Y L+S + L++ I AIG I V+ +ID Sbjct: 503 TKRSHLRSVYQTTLLSNTDLDLVYDAFINAIGENNICHGDVLEQKID 549 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 25.4 bits (53), Expect = 9.2 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = +3 Query: 396 LLRKEIDLKTVYFFTIFLTHRGHWVYYYFN 485 LLR EI +K F G W YY N Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKN 2368 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,910,651 Number of Sequences: 5004 Number of extensions: 57928 Number of successful extensions: 124 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 124 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 375345278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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