BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10m03r (776 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 29 3.1 08_02_0829 - 21604845-21605588 28 9.5 >06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491, 27829243-27829449,27829611-27829704,27829806-27829870, 27829946-27830398,27830467-27830760,27830837-27831295, 27831367-27831588,27831755-27831968,27832039-27832494, 27833280-27833389,27833468-27833644,27833758-27833979, 27834048-27834167,27834274-27834383,27834552-27834607, 27835252-27835440,27835602-27835775,27836066-27836281, 27837066-27837106,27837971-27837986,27838330-27838415, 27838737-27838910,27839093-27839149,27839720-27840064, 27840175-27840216,27840377-27840496,27840575-27840724, 27840830-27841534,27841609-27841954,27842978-27843080, 27844817-27844860,27845905-27846101,27846322-27846344, 27846802-27847122,27847406-27847579,27847843-27848047, 27848817-27848880,27850097-27850278,27850291-27850350, 27850688-27850748,27851249-27851313,27851491-27851569, 27851656-27852021,27852442-27852790,27852887-27852989, 27853103-27853373,27854296-27854405,27854515-27854652 Length = 3364 Score = 29.5 bits (63), Expect = 3.1 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +1 Query: 82 IGTILRANI*NSEQKYILFSLNIDNNRFNFCVATAKNVNIH-LSSLQFVEL 231 + ++L AN+ N +Q Y+L L+I F AT K +NI LS+L+ +++ Sbjct: 1694 VASVLDANVSNQQQMYLLSGLSIMG--FLLQSATPKLLNIETLSALKIIDI 1742 >08_02_0829 - 21604845-21605588 Length = 247 Score = 27.9 bits (59), Expect = 9.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -1 Query: 80 PIVLKAPLKAYLTCVPSCWIAN 15 P AP + L C PSCW+A+ Sbjct: 226 PAYFSAPDPSMLPCPPSCWLAS 247 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,139,125 Number of Sequences: 37544 Number of extensions: 277905 Number of successful extensions: 380 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 380 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2080154268 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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