Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03r
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    30   1.6  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    30   1.6  
Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC006723-6|AAF59425.1|  492|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   3.7  

>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 396 LLRKEIDLKTVYFFTIFLTHRGHW 467
           +LRKE+D KT+   ++FL    HW
Sbjct: 581 ILRKELDSKTIEKISVFLRKSAHW 604


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 396 LLRKEIDLKTVYFFTIFLTHRGHW 467
           +LRKE+D KT+   ++FL    HW
Sbjct: 581 ILRKELDSKTIEKISVFLRKSAHW 604


>Z74041-1|CAA98520.1|  255|Caenorhabditis elegans Hypothetical
           protein T03F7.5 protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 615 YDLAFSFAFFVPSSLLEKKKCSTKILNMWNDYLFINPISYD 493
           Y + F   FFV S +  K K S+KIL M    L   P  +D
Sbjct: 205 YSVEFHRWFFVISLIFTKSKVSSKILGMNGKELVTTPTQFD 245


>AC006723-6|AAF59425.1|  492|Caenorhabditis elegans Hypothetical
           protein Y19D10B.6 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 118 EQKYILFSLNIDNNRFNFCVATAKNVNIHLSSLQFVELDTCLKQLH 255
           E  Y   S   D+ +F+F V T +NVN+ L+++ +  L   +K L+
Sbjct: 102 ETHYEYISKKNDSEKFSFAVETLENVNLTLTNIFYNSLYANIKVLN 147


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 294 FELDYLHILRVMYCFETYHMYCKTTEHKNTEFF*LLRKEIDLKTV-YFFTIFLTHRGHWV 470
           +E   L  L + +C  +  ++  + E K  +F   +++ ++ K   +FFT  ++H   W+
Sbjct: 239 YENGKLEQLGITFCQMSLEVHSPSKEQKE-QFMIFIKRVVEEKWFGFFFTEQVSHIRMWI 297

Query: 471 YYYFN*YC-HK 500
           + + + YC HK
Sbjct: 298 FNFGSEYCVHK 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,685
Number of Sequences: 27780
Number of extensions: 318059
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)