Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03r
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    29   3.4  
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex...    29   4.5  
At1g18790.1 68414.m02342 RWP-RK domain-containing protein contai...    29   4.5  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    28   6.0  

>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 545 FVLHFFFSKSELGTKKAKENAKSYC--LIY*FHKYSRFIAEAQL 670
           FVL FFF K+ L T+  +E  KS C  L   F   + FI + +L
Sbjct: 435 FVLEFFFPKACLDTEAQQEMLKSLCVTLQQDFRSSNLFIKDLEL 478


>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 494

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 118 EQKYILFSLNIDNNRFNFCVATAKNVNIHLSSLQFVEL 231
           +Q  +LF L++ NNRF         V +HL SL+F++L
Sbjct: 167 KQLKLLFELDLSNNRF---AGKFPTVVLHLPSLKFLDL 201


>At1g18790.1 68414.m02342 RWP-RK domain-containing protein contains
           Pfam profile: PF02042 RWP-RK domain
          Length = 269

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 349 TCIAKPRNTKTRNFSSFYAKKLISKQSISLLFFLHI 456
           T   K R  +   FSS    K +SK++ISL F++ I
Sbjct: 106 TTTTKKRRCREECFSSCSVSKTLSKETISLYFYMPI 141


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 130 ILFSLNIDNNRFNFCVATAKNVNIHLSSLQFVEL 231
           +LF L++ NNRF   V    NV + L SL+F++L
Sbjct: 190 LLFELDLSNNRF---VGKFPNVVLSLPSLKFLDL 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,763
Number of Sequences: 28952
Number of extensions: 263743
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)