Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    54   2e-08
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    38   0.001
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    29   0.53 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.70 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   6.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   6.5  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   6.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   8.6  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 36/132 (27%), Positives = 67/132 (50%)
 Frame = +1

Query: 205 KSVCKATTEEMIAPKKKHLDYLVHCTNEPNVSIPQLANLLVERTQNTNWVVVYKALITVH 384
           ++V KAT  ++ APK KH++ ++  T E   ++  +   L ER +  +W +V+K LI  H
Sbjct: 12  RAVKKATKVKLAAPKYKHVEIILEATTEDPETLENVIQALCERLKEQSWTIVFKTLIVFH 71

Query: 385 HLLAYGNERFTQYLASSNSTFQLNNFLDKSGVQGAAGARIGYDMSPFIRRYAKYLNEKAL 564
            +L  G    T  + + +   ++   L  S +  A G  I Y+       Y+++L+E+A 
Sbjct: 72  VMLKEGAPNTT--IVALSQRPRILEVLKASSLL-AQGKNI-YN-------YSRFLSERAK 120

Query: 565 SYRTVAFDFCKV 600
            Y  +  D+ +V
Sbjct: 121 QYGRLGVDYAQV 132


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 24/70 (34%), Positives = 39/70 (55%)
 Frame = +1

Query: 199 LAKSVCKATTEEMIAPKKKHLDYLVHCTNEPNVSIPQLANLLVERTQNTNWVVVYKALIT 378
           L  SV KAT+ +  APK+KH+   +  T + + + P    + V+     N V  +KALIT
Sbjct: 7   LMTSVRKATSIDETAPKRKHVRSCIIFTWDHHTARPFWTAIKVQPLL-ANEVQTFKALIT 65

Query: 379 VHHLLAYGNE 408
           +H +L  G++
Sbjct: 66  IHRVLQEGHK 75


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 274 HCTNEPNVSIPQLANLLVERTQNTNWVVVYKALITVHHLLAYGNERFTQYLASSNSTFQ- 450
           H  ++ N  +P +     E+T    W  +YKAL  +  L+  G+ER      +  +T + 
Sbjct: 61  HNYSQLNEILPMIYRRFTEKTAE-EWRQIYKALQLLEFLVKNGSERVVDDARAHQATIKM 119

Query: 451 LNNF 462
           L NF
Sbjct: 120 LRNF 123


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 396  SE*MMNGYQRFINDNPISVLGAFDEQVGQL 307
            S+ +++G+QR I DNP+  + AF   +  L
Sbjct: 1733 SQLVLHGFQRVIGDNPVKGVAAFQPVIAAL 1762


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 244 PKKKHLDYLVHCTNEPNVSIPQLANLLVERTQNTNWVV 357
           P+  HLD+ +   +     IPQ A  ++E  Q  N+ V
Sbjct: 702 PQYAHLDFHIAGESYAGHYIPQFAKEIMEHNQGANFFV 739


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 387 MMNGYQRFINDNPISVLGAFDEQVGQLR 304
           M +G + F+++  I VLG  DEQ+ Q R
Sbjct: 576 MDSGLKGFLHNEKIFVLGNKDEQIRQYR 603


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 493 GARIGYDMSPFIRRYAKYLNEKALSYRTVAFD 588
           G  + + + PF+R+   Y+N K     T+  D
Sbjct: 31  GRTVAFKLHPFLRKGLAYINNKEFDENTLKSD 62


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +1

Query: 136 MAGQTINDRLLAARHSIAGQGLAKSVCKATTEEMIAPKKKHLDYLVHCTNEPNVSIPQLA 315
           MA   +   LLA   S         V  ATT +   P    +  +   T + N  + ++ 
Sbjct: 1   MAFSALAYNLLAKNFSKGYTDTQIKVRNATTNDSWGPSGTAMAEIAELTYDQNEML-EVM 59

Query: 316 NLLVERTQNT--NWVVVYKALITVHHLLAYGNERFTQY 423
           +++  R  +   NW  V+K+L  + + L  G+E   ++
Sbjct: 60  DIIDRRLNDKGKNWRHVFKSLSLLEYCLHNGSENVVRW 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,056
Number of Sequences: 5004
Number of extensions: 49447
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)