Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03f
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   5e-36
SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)                  81   7e-16
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_35034| Best HMM Match : ENTH (HMM E-Value=0)                        29   2.2  
SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_43018| Best HMM Match : Ank (HMM E-Value=2.6e-08)                   27   8.9  

>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score =  147 bits (357), Expect = 5e-36
 Identities = 68/115 (59%), Positives = 85/115 (73%)
 Frame = +1

Query: 259 LDYLVHCTNEPNVSIPQLANLLVERTQNTNWVVVYKALITVHHLLAYGNERFTQYLASSN 438
           ++ L+ CTN  NVSIP LA +L ER  N++WVVV+K+L T HHL++YGNERF QY+AS  
Sbjct: 33  IEDLIQCTNTDNVSIPNLAEILFERCTNSSWVVVFKSLCTFHHLMSYGNERFIQYMASRT 92

Query: 439 STFQLNNFLDKSGVQGAAGARIGYDMSPFIRRYAKYLNEKALSYRTVAFDFCKVK 603
           ++F L  FLDKSGVQ       GYDMS F+RRYA YLNEKA SYR + +DFC+ K
Sbjct: 93  TSFTLQGFLDKSGVQ-------GYDMSTFVRRYANYLNEKAWSYREMGYDFCRCK 140


>SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)
          Length = 523

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 39/65 (60%), Positives = 46/65 (70%)
 Frame = +1

Query: 409 RFTQYLASSNSTFQLNNFLDKSGVQGAAGARIGYDMSPFIRRYAKYLNEKALSYRTVAFD 588
           RF QY+AS  ++F L  FLDKSGVQG       YDMS F+RRYA YLNEKA SYR + +D
Sbjct: 102 RFIQYMASRTTSFTLQGFLDKSGVQG-------YDMSTFVRRYANYLNEKAWSYREMGYD 154

Query: 589 FCKVK 603
           FC+ K
Sbjct: 155 FCRCK 159


>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -1

Query: 488 APCTPLLSRKLFSWNVELLDARYCVNLSF 402
           +PC PLLSR LFS + E+L A  C  LS+
Sbjct: 817 SPCLPLLSRLLFSTDAEVL-ADTCWALSY 844


>SB_35034| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 455

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +1

Query: 211 VCKATTEEMIAPKKKHLDYLVHCTNEPNVSIPQLANLLVERTQN--TNWVVVYKALITVH 384
           V +AT+ +   P    +  +   T    V+  ++  ++  R  +   NW  VYK+L+ + 
Sbjct: 21  VREATSNDPWGPSSSLMSEIADATYNV-VAFSEIMAMIWRRLNDHGKNWRHVYKSLVLLD 79

Query: 385 HLLAYGNERFTQYLASS---NSTFQLNNFLDKSG 477
           +++  G+ER  Q    +     T +   F+DK G
Sbjct: 80  YIIKTGSERVAQQCRENIFVIQTLKDFQFIDKDG 113


>SB_10928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 148 TINDRLLAARHSIAGQG-LAKSVCKATTEEMIAPKKKHLDYLVHCTNEPNVSIPQLANLL 324
           T+ND+L+     +   G ++KS+   TT  ++ P  + L+ ++  + +P +S  +L  L 
Sbjct: 165 TVNDKLINVHKLVTLAGIISKSIVCQTTPPLVTPNMELLN-MLRVSLQPRLSEDELYELS 223

Query: 325 VERTQNT 345
           + R   T
Sbjct: 224 LAREPRT 230


>SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 148 SDPPFSRYVLKKIIYTFIRHYFQVF 74
           SDPP + Y L+ ++Y +  HY  VF
Sbjct: 69  SDPPSTEYRLEYMLYLYRYHYNSVF 93


>SB_43018| Best HMM Match : Ank (HMM E-Value=2.6e-08)
          Length = 169

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 HNVKMAGQTINDRLLAARHSIAGQGLAK-SVCKATTEEMIAPK 249
           HN + + +T+N R  +++ S+ G+ L K    KATT   I+ K
Sbjct: 40  HNSQSSPETVNPRRNSSKDSVQGRKLPKREAPKATTTSYISIK 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,041
Number of Sequences: 59808
Number of extensions: 381470
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)