Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10m03f
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 56  FVNLIEKHLKIVPYKRVN 109
           FVN I +  K VP K+VN
Sbjct: 314 FVNTIYRRKKTVPLKKVN 331


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 490 PLLVLRFCLGNYLVGTLNYSM 428
           PL+ + F L  Y  GT+NY M
Sbjct: 158 PLIPVHFALRIYRNGTVNYLM 178


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 490 PLLVLRFCLGNYLVGTLNYSM 428
           PL+ + F L  Y  GT+NY M
Sbjct: 158 PLIPVHFALRIYRNGTVNYLM 178


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 490 PLLVLRFCLGNYLVGTLNYSM 428
           PL+ + F L  Y  GT+NY M
Sbjct: 209 PLIPVHFALRIYRNGTVNYLM 229


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 490 PLLVLRFCLGNYLVGTLNYSM 428
           PL+ + F L  Y  GT+NY M
Sbjct: 158 PLIPVHFALRIYRNGTVNYLM 178


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -2

Query: 409 SHSRKRVDDERLSALYKRQPN 347
           +  ++ +++E+L+ +YK  PN
Sbjct: 439 NEEKRTIENEQLNRMYKSYPN 459


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 397 YGNERFTQYLASSNSTFQLNNFLD 468
           +  ++FTQY+  S+S  Q    +D
Sbjct: 390 HNTQQFTQYIPESSSNLQEKTKID 413


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 225 YRRNDSAEKETFRLSSTLHKRA*RVDTAAG 314
           +RRN +  K   R + +LHK   RV+   G
Sbjct: 541 FRRNAATWKNAVRHNLSLHKCFMRVENVKG 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,306
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)