SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l22f
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)        58   4e-09
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)                      42   4e-04
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    29   2.3  
SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_650| Best HMM Match : rve (HMM E-Value=0.00048)                     28   4.0  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       27   6.9  
SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)                   27   6.9  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   27   6.9  
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     27   6.9  
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                27   9.2  
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)                   27   9.2  
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
          Length = 90

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 30/75 (40%), Positives = 42/75 (56%)
 Frame = +2

Query: 218 VGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCK 397
           VGV   P  KG  +  +K KA  KP K + +      +RR+L  ++ +   N+YR DL  
Sbjct: 2   VGVDAAPSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKD 61

Query: 398 ATLRRASAILRSQRP 442
             +RRA AILRSQ+P
Sbjct: 62  PAMRRACAILRSQKP 76


>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
          Length = 132

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 13  RTHCEHVVFGVEIGLN-RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQ 189
           R +C   +F  E   + R NV     D +P+  C PCE + Y+  +Q+G EQ   PP+L+
Sbjct: 38  RKYCNKGLFKGEFQEHWRVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILR 92

Query: 190 VQRLDSQESCWCRGEP 237
                ++E C+C  +P
Sbjct: 93  SWTPHTEEGCFCEAKP 108


>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 502 LSAY-KLFRLGCGCLSLFCFNGPLG 431
           + AY +  R+GC CL L C++GP G
Sbjct: 86  VEAYVRCLRMGCRCLELDCWDGPDG 110


>SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/78 (23%), Positives = 34/78 (43%)
 Frame = +2

Query: 176 LHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVK 355
           LH F     +     GV E   RKG   +   A   R      +RR    G++ S  K++
Sbjct: 171 LHQFDEAQTLSSPRCGVTEQNMRKGRETLRDFANRLRVTTTRRVRRFVTQGSKWSHSKIR 230

Query: 356 RLLKANHYRTDLCKATLR 409
             +K+  + + + +A+++
Sbjct: 231 WTIKSGDFSSKMSEASVK 248


>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
          Length = 363

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 31  VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 150
           V  G+E   N +N+ +T    +  P Q  +PC +A Y+  VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 263 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 421
           YK AKA  KPAK    L +  +K A A+  L K K +L KA H    L KA  + A A
Sbjct: 278 YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 332


>SB_45094| Best HMM Match : DUF1090 (HMM E-Value=1.6)
          Length = 169

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 263 YKKAKATRKPAK---NLIRRPFK-AGARRSLYKVK-RLLKANHYRTDLCKATLRRASA 421
           YK AKA  KPAK    L +  +K A A+  L K K +L KA H    L KA  + A A
Sbjct: 65  YKLAKAKYKPAKAKYKLAKAKYKLAKAKYKLAKAKHKLAKAKH---KLAKAKYKLAKA 119


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 16  THCEHVVFGVEIGLNRKNVVVTELDDHPQQQCI 114
           +HC+H++ G E G+   N +   + D   +QC+
Sbjct: 261 SHCKHILIGAEEGIYSLN-ISDHVHDMEMEQCL 292


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 280 YQKAR*KLNPPSIQGWCQEVTV 345
           YQK    LNP S  GWC+ V V
Sbjct: 451 YQKDPCVLNPCSSHGWCEAVNV 472


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +2

Query: 122 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKN 301
           +K ++KK       N    + +R N  ++KK     E+P  +   ++YK  + TRKP + 
Sbjct: 10  EKFDMKKNEPAPIANKYKAYLYRTNKQMNKKQ----EHPVTQRKQMIYKPGRMTRKPGRL 65

Query: 302 LIRRPFKAGARRS 340
           + RR  +   + S
Sbjct: 66  VTRRTSRVTLKTS 78


>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
          Length = 255

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 92  IIRNNNAFLVKKRNIKKPFSKEPNNVT-NLHSFRYNGLIHKKAVGVVENPDRKGFT 256
           ++ + + FL K      PF+ +  +V   LH    +G  ++ AV  VE   R+GFT
Sbjct: 9   LVSSPSDFLCKTIPFSTPFATDSVHVQITLHMDEQSGPTYEAAVNWVEQVCREGFT 64


>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 208 VNQAVVPEGVEVSHIVRLLAERL--FDIALLHKECIVVADDHPV 83
           VN+ V     ++  +++L   RL   D++L++K CI  A DH V
Sbjct: 138 VNEVVKKSSKKLYFLIQLKRARLPPSDLSLIYKACIRSAVDHAV 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,198
Number of Sequences: 59808
Number of extensions: 330677
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -