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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l21r
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   163   2e-41
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    31   0.23 
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.23 
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    29   0.53 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.2  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    27   3.7  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   3.7  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   4.9  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   6.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   8.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.6  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  163 bits (397), Expect = 2e-41
 Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 1/222 (0%)
 Frame = -3

Query: 717 QFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGD 541
           + ++ A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+
Sbjct: 81  EVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGE 139

Query: 540 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361
           K R  L R   +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS
Sbjct: 140 KVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVS 199

Query: 360 YAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMT 181
           +      LYT K+I  +  L+AY+  D +V Q   EF+ A+ +F A+ E  CSE SSR  
Sbjct: 200 FETVMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCSEMSSRRN 258

Query: 180 AMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55
           AM+NASK+AG+MI+K ++ +NR RQA IT ELI+I++GA +L
Sbjct: 259 AMENASKSAGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -3

Query: 447  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 268
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 267  QSY-TEFSLASLLFYALKEGACSEQSSRMTAM 175
            QS+    +L   L   ++    + Q SR  A+
Sbjct: 2516 QSFGNAKNLVEALKVNIEAPPSTSQDSRRLAL 2547


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = -3

Query: 690 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 526
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 525 LQRLYGKHIISVA 487
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 25/126 (19%), Positives = 51/126 (40%)
 Frame = -3

Query: 444 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQ 265
           +L  A+ +      +   I+N+FKS+ +  Q   P   +       +   + +   D L+
Sbjct: 53  ELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLK 112

Query: 264 SYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITREL 85
           S  E +++ L+    KE A    +  +       K  G    ++ L F+  R  V+  + 
Sbjct: 113 SIAEATISGLI--PTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170

Query: 84  IEIISG 67
           + I +G
Sbjct: 171 LSIRNG 176


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 571 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 705
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 571 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 705
           ST+F+   A + GY  +Y+  Q++V      N Q+  V FG  N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 220 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 303
           +R+EQ+R Q+E  + L+    QR++RS+
Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
 Frame = -3

Query: 336 YTKKSIES-ASKLTAYDSL--DSDVLQSYT--EFSLASLLFYALKEGACSEQSSRMTAMD 172
           YT K+ E  A  L+  +++  ++++L  +T  E +LAS +++ +  GA   +   ++A  
Sbjct: 100 YTAKTKEDFAYLLSQLETIFKENEILNEFTPVEVALASDIYFCVLNGAPVREYPLLSAWY 159

Query: 171 NASKNAGEMIDKLTLTFNRT--RQAVITRELIEI 76
              +     +  L LTF +T  + AV + E I +
Sbjct: 160 LKIEKQKPFVQALKLTFEKTLGQPAVTSTEKIPV 193


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 515 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 387
           C   ++L  L +S++   LS  +  +PL  + RDT L+   +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 282 DSDVLQSYTEFSLASLLFYALKEGACSEQ 196
           D D+ Q Y   ++ASLL ++L +  CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 22/88 (25%), Positives = 44/88 (50%)
 Frame = -3

Query: 417 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLAS 238
           G +  +  I +++F+  V  ++S  P  TKK    ASK +  D+L  + ++   E +  +
Sbjct: 257 GIKKANADIDFDEFEKAVLSSES-AP--TKKPAAVASKESTVDTLVDNGVEEVKESTSTT 313

Query: 237 LLFYALKEGACSEQSSRMTAMDNASKNA 154
           +    +K    S  S++ T  D+++ NA
Sbjct: 314 VQGKPVKPVLKSAASAKSTKSDDSNLNA 341


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 657 AMTSDRGLCGAVHTGVSKVIRNRLSE 580
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 430 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 582
           SS ++  V  + W +  L  +TND  +++S+ DT R  S     DV+   F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = -1

Query: 599 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 420
           S+  S++ +  +S  S    +   S    + +TS  L   S  S  L+ + ++   L+S 
Sbjct: 83  SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142

Query: 419 RDTSLVPERSFTTSSSLWSRTPSPT 345
             TS     S TTSSSL S + + T
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNST 167


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 439 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 612
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,246
Number of Sequences: 5004
Number of extensions: 53279
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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