BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l21r (743 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 163 2e-41 SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 31 0.23 SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.23 SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 29 0.53 SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.2 SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.2 SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 27 3.7 SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 27 3.7 SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.9 SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 26 4.9 SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 6.5 SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 6.5 SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 8.6 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.6 SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.6 >SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 301 Score = 163 bits (397), Expect = 2e-41 Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 1/222 (0%) Frame = -3 Query: 717 QFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGD 541 + ++ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+ Sbjct: 81 EVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGE 139 Query: 540 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361 K R L R + IG P+F +A Q+++ IL ++ ++YNKF S VS Sbjct: 140 KVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVS 199 Query: 360 YAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMT 181 + LYT K+I + L+AY+ D +V Q EF+ A+ +F A+ E CSE SSR Sbjct: 200 FETVMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCSEMSSRRN 258 Query: 180 AMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55 AM+NASK+AG+MI+K ++ +NR RQA IT ELI+I++GA +L Sbjct: 259 AMENASKSAGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300 >SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2670 Score = 30.7 bits (66), Expect = 0.23 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = -3 Query: 447 SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 268 S+ + IL + +FGS KII K +V S L + +I L +L +D+ Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515 Query: 267 QSY-TEFSLASLLFYALKEGACSEQSSRMTAM 175 QS+ +L L ++ + Q SR A+ Sbjct: 2516 QSFGNAKNLVEALKVNIEAPPSTSQDSRRLAL 2547 >SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 30.7 bits (66), Expect = 0.23 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = -3 Query: 690 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 526 PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC + Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128 Query: 525 LQRLYGKHIISVA 487 L +Y ++VA Sbjct: 129 LMTVYSLGELAVA 141 >SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizosaccharomyces pombe|chr 1|||Manual Length = 228 Score = 29.5 bits (63), Expect = 0.53 Identities = 25/126 (19%), Positives = 51/126 (40%) Frame = -3 Query: 444 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQ 265 +L A+ + + I+N+FKS+ + Q P + + + + D L+ Sbjct: 53 ELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLK 112 Query: 264 SYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITREL 85 S E +++ L+ KE A + + K G ++ L F+ R V+ + Sbjct: 113 SIAEATISGLI--PTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 Query: 84 IEIISG 67 + I +G Sbjct: 171 LSIRNG 176 >SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 383 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +1 Query: 571 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 705 ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155 >SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 383 Score = 28.3 bits (60), Expect = 1.2 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +1 Query: 571 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 705 ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155 >SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 26.6 bits (56), Expect = 3.7 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +1 Query: 220 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 303 +R+EQ+R Q+E + L+ QR++RS+ Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132 >SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 782 Score = 26.6 bits (56), Expect = 3.7 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%) Frame = -3 Query: 336 YTKKSIES-ASKLTAYDSL--DSDVLQSYT--EFSLASLLFYALKEGACSEQSSRMTAMD 172 YT K+ E A L+ +++ ++++L +T E +LAS +++ + GA + ++A Sbjct: 100 YTAKTKEDFAYLLSQLETIFKENEILNEFTPVEVALASDIYFCVLNGAPVREYPLLSAWY 159 Query: 171 NASKNAGEMIDKLTLTFNRT--RQAVITRELIEI 76 + + L LTF +T + AV + E I + Sbjct: 160 LKIEKQKPFVQALKLTFEKTLGQPAVTSTEKIPV 193 >SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 314 Score = 26.2 bits (55), Expect = 4.9 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = -1 Query: 515 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 387 C ++L L +S++ LS + +PL + RDT L+ +F Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214 >SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit Cwg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 26.2 bits (55), Expect = 4.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 282 DSDVLQSYTEFSLASLLFYALKEGACSEQ 196 D D+ Q Y ++ASLL ++L + CS Q Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174 >SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 486 Score = 25.8 bits (54), Expect = 6.5 Identities = 22/88 (25%), Positives = 44/88 (50%) Frame = -3 Query: 417 GYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLAS 238 G + + I +++F+ V ++S P TKK ASK + D+L + ++ E + + Sbjct: 257 GIKKANADIDFDEFEKAVLSSES-AP--TKKPAAVASKESTVDTLVDNGVEEVKESTSTT 313 Query: 237 LLFYALKEGACSEQSSRMTAMDNASKNA 154 + +K S S++ T D+++ NA Sbjct: 314 VQGKPVKPVLKSAASAKSTKSDDSNLNA 341 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 25.8 bits (54), Expect = 6.5 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -3 Query: 657 AMTSDRGLCGAVHTGVSKVIRNRLSE 580 A+ SD +C V TG+S ++RLS+ Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216 >SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces pombe|chr 2|||Manual Length = 1309 Score = 25.4 bits (53), Expect = 8.6 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 430 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 582 SS ++ V + W + L +TND +++S+ DT R S DV+ F Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 25.4 bits (53), Expect = 8.6 Identities = 24/85 (28%), Positives = 39/85 (45%) Frame = -1 Query: 599 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 420 S+ S++ + +S S + S + +TS L S S L+ + ++ L+S Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142 Query: 419 RDTSLVPERSFTTSSSLWSRTPSPT 345 TS S TTSSSL S + + T Sbjct: 143 SITSSSLASSSTTSSSLASSSTNST 167 >SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 25.4 bits (53), Expect = 8.6 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = +1 Query: 439 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 612 +L + ES+++T+ +T + + D R+I D D + +ET+A F Y Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,777,246 Number of Sequences: 5004 Number of extensions: 53279 Number of successful extensions: 190 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 184 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 188 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 353266144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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