Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l21r
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             250   1e-66
SB_13648| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   8e-10
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)              33   0.32 
SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)             31   1.3  
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)                  29   4.0  
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       29   5.3  
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   7.0  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_35700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  250 bits (611), Expect = 1e-66
 Identities = 113/231 (48%), Positives = 171/231 (74%), Gaps = 2/231 (0%)
 Frame = -3

Query: 741 RPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENI 562
           R YG+GA   Y++ E+    +DPK L V ++SDRGLCG +H+G++K ++  ++   + N+
Sbjct: 98  RAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNV 157

Query: 561 KVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYN 382
            ++  GDK++ IL R  GK+++    ++G+ PP F +A+ LA  IL +G++F +G + YN
Sbjct: 158 GIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYN 217

Query: 381 KFKSVVSYAQSDLPLYTKKSIESASK--LTAYDSLDSDVLQSYTEFSLASLLFYALKEGA 208
            F+SVVS+  S   +Y+  ++ +A+   +++YD LDS+V++ Y EF+LAS+LF+ +KE +
Sbjct: 218 VFRSVVSFRASTKSIYSFDNLNNAASDSMSSYDELDSEVIRCYQEFNLASMLFFGMKEQS 277

Query: 207 CSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55
           CSE S+RMTAMD A+KNAGEMIDKLTLT+NRTRQAVITREL+EIISGAAA+
Sbjct: 278 CSEHSARMTAMDAATKNAGEMIDKLTLTYNRTRQAVITRELVEIISGAAAV 328


>SB_13648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = -3

Query: 150 EMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55
           EMIDKLTLT+NRTRQAVITREL+EIISGAAA+
Sbjct: 2   EMIDKLTLTYNRTRQAVITRELVEIISGAAAV 33


>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
          Length = 571

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
 Frame = -3

Query: 675 PKQLFVAMTSDRG-LCGAVHTGVSKV------IRNRLSEPGAENIKVICVGDKSRGILQR 517
           P++LF+   S  G +  AV+TG+S+V      +R    +     IK   + D+ +G  + 
Sbjct: 447 PRRLFIIDHSLEGWITNAVYTGISRVRLAGQIVRVIPPDDTPARIKRYAIDDRQKGRTKY 506

Query: 516 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 412
               H+++V N +G +       +   T +L  GY
Sbjct: 507 TGPHHVLTVDNVLGMIADAEKKYTLCGTQLLLQGY 541


>SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)
          Length = 261

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +1

Query: 256 RVGLEHVAVQRVVRSQLAGALNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSS 435
           RVG +  A  RVV  +++G+L+R   V    G   R + +  +   +S   LV RG+  S
Sbjct: 139 RVGTQISAAYRVVIIRISGSLSRAYLVGRMSGGMSRAYLVGRMSGSMSRVYLVGRGKHVS 198

Query: 436 GQLT 447
           G+++
Sbjct: 199 GRIS 202


>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -3

Query: 675  PKQLFVAMTSDRG-LCGAVHTGVSKVIRNRLSEPGAEN-----IKVICVGDKSRGILQRL 514
            P++LF+   +  G +  AV+TG+ +V   RL    +E      IK   + D+ +G  +  
Sbjct: 842  PRRLFIIDHNLEGWIANAVYTGIFRV---RLQATPSEELIIARIKRYAIDDRQKGRTKYT 898

Query: 513  YGKHIISVANEIGRLPPTFLDASQLATAILTSGY 412
               H+++V + +G +  T    +     +L  GY
Sbjct: 899  GSHHVLTVDHVLGMIAETEKKCTVCGAQLLLQGY 932


>SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)
          Length = 719

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +1

Query: 277 AVQRVVRSQLAGALNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQ 456
           AV   VR   +   +RLL +EG V     DH     +N+  GT  + R ++S      ++
Sbjct: 654 AVWDTVRLWASRTRHRLLGIEGAVS----DHSGGTTLNNTRGTATLIRVKESRVNNGVIE 709

Query: 457 ESRWETSDL 483
            S W  S L
Sbjct: 710 ASHWNNSCL 718


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +1

Query: 325 LLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQE-----SRWETSDLIS 489
           LL +  QV    RDH    V    +G K+ S  E+S GQ + V       SR+E  D  +
Sbjct: 401 LLRITEQVKW-TRDHHETHVTTLPNGIKVAS--EESFGQFSTVGVVIDGGSRYEV-DHPN 456

Query: 490 NTNDVLSVQSLQDTARFISHTDHLDVL 570
               V+   + Q TA+F SH D +  L
Sbjct: 457 GVTHVIEKMAFQSTAKFPSHDDIMQEL 483


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
 Frame = -3

Query: 675  PKQLFVAMTSDRG-LCGAVHTGVSKVIRN----RLSEPGAEN-----IKVICVGDKSRGI 526
            P++LF+   S  G +  AV+TG+S+V       R++ P   +     IK   + D+ +G 
Sbjct: 754  PRRLFIIDHSLEGWITNAVYTGISRVRHTDQIVRVTPPPPPDNTPARIKRYAIDDRQKGR 813

Query: 525  LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 412
             +     H+++V + +G +       +   T  L  GY
Sbjct: 814  TKYTGSHHLLTVYHVLGMIADAEKKCTVCGTQRLLQGY 851


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 481 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 660
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 661 KQ 666
            Q
Sbjct: 121 SQ 122


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 705 RAEVTPPEDDPKQLFVAMTSDRGLCG 628
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_35700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 225 ALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITREL 85
           +L +  CS++S  +  ++N +    E ++ +T+  NRT    IT+EL
Sbjct: 263 SLIKSYCSKES--VVVLENVTSLINETVNGITVAVNRTAPMNITKEL 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,313
Number of Sequences: 59808
Number of extensions: 450692
Number of successful extensions: 1367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)