BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l21r (743 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 155 3e-38 At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 69 3e-12 At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 61 9e-10 At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr... 31 0.61 At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa... 31 0.81 At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 30 1.4 At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr... 30 1.4 At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 30 1.9 At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 30 1.9 At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 29 3.3 At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 29 3.3 At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 29 3.3 At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 4.3 At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 4.3 At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 28 5.7 At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 5.7 At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 5.7 At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 7.5 At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 7.5 At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 7.5 At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 28 7.5 At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ... 27 9.9 At3g21200.1 68416.m02679 expressed protein 27 9.9 >At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial (ATPC) identical to SP|Q96250 ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase Length = 325 Score = 155 bits (376), Expect = 3e-38 Identities = 91/226 (40%), Positives = 140/226 (61%), Gaps = 13/226 (5%) Frame = -3 Query: 690 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRN--RLSEPGAENIKVICVGDKSRGILQR 517 P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+ R Sbjct: 98 PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157 Query: 516 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPL 337 I+ E+ + P + S LA IL + EF + +I+YNKF SVV++ + + Sbjct: 158 DSKNDIVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTV 216 Query: 336 YTKKSIESAS----KLTAYDSLD-------SDVLQSYTEFSLASLLFYALKEGACSEQSS 190 + + IE S KL DS + ++LQ+ EF + ++F A+ E ACSE + Sbjct: 217 LSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGA 276 Query: 189 RMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALD 52 RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL+ Sbjct: 277 RMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322 >At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast (ATPC2) identical to SP|Q01909 ATP synthase gamma chain 2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis thaliana}; contains Pfam profile: PF00231 ATP synthase; similar to ATP synthase gamma-subunit GI:21241 from [Spinacia oleracea] Length = 386 Score = 68.9 bits (161), Expect = 3e-12 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%) Frame = -3 Query: 333 TKKSIESA--SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASK 160 TK +E S L ++ +L + L S + AL+E SE +SRM AM NA+ Sbjct: 289 TKLEVEKPEISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATD 348 Query: 159 NAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55 NA E+ LT+ +NR RQA IT EL+EI++GA AL Sbjct: 349 NAVELKKNLTMAYNRARQAKITGELLEIVAGAEAL 383 Score = 37.5 bits (83), Expect = 0.009 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Frame = -3 Query: 660 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQRLYGKHIISVA 487 V +T D+GLCG + V+K R+ E I VI VG K R + + Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR-RDEFDVDKC 198 Query: 486 NEIGRLPPTFLDASQLATAI--LTSGYEFGSGKIIYNKFKSVV 364 E G + PT +A +A + L E +++Y KF S+V Sbjct: 199 IEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLV 241 >At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast (ATPC1) identical to SP|Q01908 ATP synthase gamma chain 1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis thaliana} Length = 373 Score = 60.9 bits (141), Expect = 9e-10 Identities = 31/84 (36%), Positives = 51/84 (60%) Frame = -3 Query: 309 SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 130 S + ++ +L + L S + AL+E SE ++RM+AM +AS NA ++ L+ Sbjct: 288 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLS 347 Query: 129 LTFNRTRQAVITRELIEIISGAAA 58 + +NR RQA IT E++EI++GA A Sbjct: 348 MVYNRKRQAKITGEILEIVAGANA 371 Score = 35.1 bits (77), Expect = 0.050 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 5/108 (4%) Frame = -3 Query: 672 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRG-ILQRLYGKH 502 K V +T DRGLCG + + K R+ E ++ VI VG K L+R Y Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPYIP- 184 Query: 501 IISVANEIGRLPPTFLDASQLATAI--LTSGYEFGSGKIIYNKFKSVV 364 + E G L PT +A +A + L E +++Y KF S+V Sbjct: 185 -VDKYLEAGTL-PTAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLV 230 >At2g13790.1 68415.m01522 leucine-rich repeat family protein / protein kinase family protein Length = 620 Score = 31.5 bits (68), Expect = 0.61 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%) Frame = -3 Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538 ER E P D PK+ +A+ S RGL K+I + E + + VGD Sbjct: 382 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAV-VGDF 440 Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361 L H+ +V IG + P +L + + GY ++I + ++ Sbjct: 441 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLA 500 Query: 360 YAQSDLPLYTKKSIESASKLTAYDSL-DSDVLQSYTEFSLASLLFYALKEGACSEQSS 190 +D + ++ K +SL D+++ Y E + L+ AL C++ S+ Sbjct: 501 RLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL---LCTQSSA 555 >At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger) Length = 302 Score = 31.1 bits (67), Expect = 0.81 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = -3 Query: 468 PPTFLDASQLA----TAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL 301 P T + AS L T IL + + G + + ++ S Y+Q + +T +ES + + Sbjct: 4 PGTEIKASDLTLLVITIILFAIFIVGLASVCF-RWTSRQFYSQESINPFTDSDVESRTSI 62 Query: 300 TAYDSLDSDVLQSYTEF 250 TA LD ++ S+ F Sbjct: 63 TAVRGLDEAIINSFPTF 79 >At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated receptor kinase 1 (BAK1) / somatic embryogenesis receptor-like kinase 3 (SERK3) identical to SP|Q94F62 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) {Arabidopsis thaliana}; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; identical to cDNA somatic embryogenesis receptor-like kinase 3 (SERK3) GI:14573458 Length = 615 Score = 30.3 bits (65), Expect = 1.4 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Frame = -3 Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538 ER E PP D PK+ +A+ S RGL K+I + E + + VGD Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV-VGDF 435 Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGY 412 L H+ +V IG + P +L + + GY Sbjct: 436 GLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGY 478 >At2g13800.1 68415.m01523 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 601 Score = 30.3 bits (65), Expect = 1.4 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%) Frame = -3 Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538 ER E P D PK+ +A+ S RGL K+I + E + + VGD Sbjct: 363 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHLDVKAANILLDEEFEAV-VGDF 421 Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361 L H+ +V IG + P +L + + GY ++I + ++ Sbjct: 422 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLA 481 Query: 360 YAQSDLPLYTKKSIESASKLTAYDSL-DSDVLQSYTEFSLASLLFYALKEGACSEQSS 190 +D + ++ K +SL D+++ Y E + L+ AL C++ S+ Sbjct: 482 RLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL---LCTQSSA 536 >At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) Length = 1131 Score = 29.9 bits (64), Expect = 1.9 Identities = 34/165 (20%), Positives = 73/165 (44%) Frame = -3 Query: 633 CGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFL 454 CG G S ++ SE GA +S G++Q K+ A + + + Sbjct: 568 CGTSKDGESFIVEWNESE-GAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626 Query: 453 DASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSD 274 DA QL TAI G S +I +NK S+++ + ++ + + + L ++++ S+ Sbjct: 627 DAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSE 686 Query: 273 VLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 139 + S+A+ A +++S+ + ++ + ++ M+D Sbjct: 687 SSKPAIN-SIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVD 730 >At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) Length = 1131 Score = 29.9 bits (64), Expect = 1.9 Identities = 34/165 (20%), Positives = 73/165 (44%) Frame = -3 Query: 633 CGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFL 454 CG G S ++ SE GA +S G++Q K+ A + + + Sbjct: 568 CGTSKDGESFIVEWNESE-GAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626 Query: 453 DASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSD 274 DA QL TAI G S +I +NK S+++ + ++ + + + L ++++ S+ Sbjct: 627 DAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSE 686 Query: 273 VLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 139 + S+A+ A +++S+ + ++ + ++ M+D Sbjct: 687 SSKPAIN-SIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVD 730 >At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats; similar to phospholipase a-2-activating protein SP:P27612 from [Mus musculus] Length = 760 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = +1 Query: 79 LDELPGDDSLTGPVEREGQ 135 LDELPG DSLT P +GQ Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347 >At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats; similar to phospholipase a-2-activating protein SP:P27612 from [Mus musculus] Length = 760 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = +1 Query: 79 LDELPGDDSLTGPVEREGQ 135 LDELPG DSLT P +GQ Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347 >At1g44900.1 68414.m05144 DNA replication licensing factor, putative similar to DNA replication licensing factor MCM2 from {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens}; contains Pfam profile PF00493: MCM2/3/5 family Length = 928 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 381 KFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLA 241 KF+ ++S + S LP K E +K YD D S T+FS A Sbjct: 862 KFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKA 908 >At5g19130.2 68418.m02277 GPI transamidase component family protein / Gaa1-like family protein contains Pfam profile: PF04114 Gaa1-like, GPI transamidase component Length = 696 Score = 28.7 bits (61), Expect = 4.3 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +2 Query: 485 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 625 L ++ PY +C++P SPT ++M+ S L + P C+ Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554 >At5g19130.1 68418.m02276 GPI transamidase component family protein / Gaa1-like family protein contains Pfam profile: PF04114 Gaa1-like, GPI transamidase component Length = 699 Score = 28.7 bits (61), Expect = 4.3 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +2 Query: 485 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 625 L ++ PY +C++P SPT ++M+ S L + P C+ Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557 >At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to anther-specific protein ATA27 (GI:2746341) [Arabidopsis thaliana] Length = 534 Score = 28.3 bits (60), Expect = 5.7 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +1 Query: 469 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 612 E S ++ N+ D + + TARF++H H+D+ RF T H Y Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370 >At2g36670.2 68415.m04498 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease Length = 507 Score = 28.3 bits (60), Expect = 5.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 566 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 682 F APGSL +T P+C++ + + + NN G S Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185 >At2g36670.1 68415.m04497 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease Length = 512 Score = 28.3 bits (60), Expect = 5.7 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +2 Query: 566 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 682 F APGSL +T P+C++ + + + NN G S Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190 >At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family protein contains Pfam profile PF04091: Exocyst complex subunit Sec15-like Length = 771 Score = 27.9 bits (59), Expect = 7.5 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 538 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 675 F H HL + R AE HF T ++A+ ++ G K++ G Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581 >At4g01380.1 68417.m00178 plastocyanin-like domain-containing protein Length = 210 Score = 27.9 bits (59), Expect = 7.5 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -2 Query: 463 YFLGRKSAGHCYPHLGIRV 407 YF+ K+ GHCY L +RV Sbjct: 152 YFISSKTPGHCYAGLKLRV 170 >At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical beta-glucosidase GI:10834547 Length = 577 Score = 27.9 bits (59), Expect = 7.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 469 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 582 E S ++ N++D + + TARF +H H+D RF Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356 >At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (IGPS) nearly identical to SP|P49572 Length = 402 Score = 27.9 bits (59), Expect = 7.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 316 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGE 426 + R+L +EG +G+ + LE D+S TK + GE Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGE 340 >At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing protein PBF protein, Triticum aestivum, EMBL:AJ012284 Length = 210 Score = 27.5 bits (58), Expect = 9.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +1 Query: 475 SDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTS 618 S+++S N ++ QS + T D S+ V +HFGY S Sbjct: 87 SEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134 >At3g21200.1 68416.m02679 expressed protein Length = 317 Score = 27.5 bits (58), Expect = 9.9 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +2 Query: 569 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 709 S P SLR + TLDTP + HKP + + + + SS G S L+ Sbjct: 35 SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,010,329 Number of Sequences: 28952 Number of extensions: 295978 Number of successful extensions: 988 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 955 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 986 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1643603136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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