SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l21r
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...   155   3e-38
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast...    69   3e-12
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast...    61   9e-10
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    31   0.61 
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa...    31   0.81 
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate...    30   1.4  
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr...    30   1.4  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    30   1.9  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    30   1.9  
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    29   3.3  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    29   3.3  
At1g44900.1 68414.m05144 DNA replication licensing factor, putat...    29   3.3  
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   4.3  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   4.3  
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con...    28   5.7  
At2g36670.2 68415.m04498 aspartyl protease family protein contai...    28   5.7  
At2g36670.1 68415.m04497 aspartyl protease family protein contai...    28   5.7  
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    28   7.5  
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro...    28   7.5  
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con...    28   7.5  
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I...    28   7.5  
At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ...    27   9.9  
At3g21200.1 68416.m02679 expressed protein                             27   9.9  

>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score =  155 bits (376), Expect = 3e-38
 Identities = 91/226 (40%), Positives = 140/226 (61%), Gaps = 13/226 (5%)
 Frame = -3

Query: 690 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRN--RLSEPGAENIKVICVGDKSRGILQR 517
           P  D  K + V ++SD+GLCG +++ V KV R   +L+    + ++ + VG+K++ I+ R
Sbjct: 98  PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157

Query: 516 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPL 337
                I+    E+ + P  +   S LA  IL +  EF + +I+YNKF SVV++  +   +
Sbjct: 158 DSKNDIVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTV 216

Query: 336 YTKKSIESAS----KLTAYDSLD-------SDVLQSYTEFSLASLLFYALKEGACSEQSS 190
            + + IE  S    KL   DS +        ++LQ+  EF  + ++F A+ E ACSE  +
Sbjct: 217 LSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGA 276

Query: 189 RMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALD 52
           RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 277 RMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322


>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
           (ATPC2) identical to SP|Q01909 ATP synthase gamma chain
           2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase;
           similar to ATP synthase gamma-subunit GI:21241 from
           [Spinacia oleracea]
          Length = 386

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
 Frame = -3

Query: 333 TKKSIESA--SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASK 160
           TK  +E    S L  ++     +L +     L S +  AL+E   SE +SRM AM NA+ 
Sbjct: 289 TKLEVEKPEISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATD 348

Query: 159 NAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55
           NA E+   LT+ +NR RQA IT EL+EI++GA AL
Sbjct: 349 NAVELKKNLTMAYNRARQAKITGELLEIVAGAEAL 383



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = -3

Query: 660 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQRLYGKHIISVA 487
           V +T D+GLCG  +  V+K    R+ E     I   VI VG K      R   +  +   
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR-RDEFDVDKC 198

Query: 486 NEIGRLPPTFLDASQLATAI--LTSGYEFGSGKIIYNKFKSVV 364
            E G + PT  +A  +A  +  L    E    +++Y KF S+V
Sbjct: 199 IEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLV 241


>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
           (ATPC1) identical to SP|Q01908 ATP synthase gamma chain
           1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}
          Length = 373

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 31/84 (36%), Positives = 51/84 (60%)
 Frame = -3

Query: 309 SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 130
           S +  ++     +L +     L S +  AL+E   SE ++RM+AM +AS NA ++   L+
Sbjct: 288 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLS 347

Query: 129 LTFNRTRQAVITRELIEIISGAAA 58
           + +NR RQA IT E++EI++GA A
Sbjct: 348 MVYNRKRQAKITGEILEIVAGANA 371



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
 Frame = -3

Query: 672 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRG-ILQRLYGKH 502
           K   V +T DRGLCG  +  + K    R+ E     ++  VI VG K     L+R Y   
Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPYIP- 184

Query: 501 IISVANEIGRLPPTFLDASQLATAI--LTSGYEFGSGKIIYNKFKSVV 364
            +    E G L PT  +A  +A  +  L    E    +++Y KF S+V
Sbjct: 185 -VDKYLEAGTL-PTAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLV 230


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%)
 Frame = -3

Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538
           ER E  P  D PK+  +A+ S RGL         K+I   +        E  + + VGD 
Sbjct: 382 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAV-VGDF 440

Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361
               L      H+  +V   IG + P +L   + +      GY     ++I  +    ++
Sbjct: 441 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLA 500

Query: 360 YAQSDLPLYTKKSIESASKLTAYDSL-DSDVLQSYTEFSLASLLFYALKEGACSEQSS 190
              +D  +     ++   K    +SL D+++   Y E  +  L+  AL    C++ S+
Sbjct: 501 RLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL---LCTQSSA 555


>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 302

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -3

Query: 468 PPTFLDASQLA----TAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL 301
           P T + AS L     T IL + +  G   + + ++ S   Y+Q  +  +T   +ES + +
Sbjct: 4   PGTEIKASDLTLLVITIILFAIFIVGLASVCF-RWTSRQFYSQESINPFTDSDVESRTSI 62

Query: 300 TAYDSLDSDVLQSYTEF 250
           TA   LD  ++ S+  F
Sbjct: 63  TAVRGLDEAIINSFPTF 79


>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
           receptor kinase 1 (BAK1) / somatic embryogenesis
           receptor-like kinase 3 (SERK3) identical to SP|Q94F62
           BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
           1 precursor (EC 2.7.1.37) (BRI1-associated receptor
           kinase 1) (Somatic embryogenesis receptor-like kinase 3)
           {Arabidopsis thaliana}; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain;
           identical to cDNA somatic embryogenesis receptor-like
           kinase 3 (SERK3) GI:14573458
          Length = 615

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
 Frame = -3

Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538
           ER E  PP D PK+  +A+ S RGL         K+I   +        E  + + VGD 
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV-VGDF 435

Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGY 412
               L      H+  +V   IG + P +L   + +      GY
Sbjct: 436 GLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGY 478


>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 601

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%)
 Frame = -3

Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538
           ER E  P  D PK+  +A+ S RGL         K+I   +        E  + + VGD 
Sbjct: 363 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHLDVKAANILLDEEFEAV-VGDF 421

Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361
               L      H+  +V   IG + P +L   + +      GY     ++I  +    ++
Sbjct: 422 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLA 481

Query: 360 YAQSDLPLYTKKSIESASKLTAYDSL-DSDVLQSYTEFSLASLLFYALKEGACSEQSS 190
              +D  +     ++   K    +SL D+++   Y E  +  L+  AL    C++ S+
Sbjct: 482 RLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL---LCTQSSA 536


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
            WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 34/165 (20%), Positives = 73/165 (44%)
 Frame = -3

Query: 633  CGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFL 454
            CG    G S ++    SE GA          +S G++Q    K+    A +   +    +
Sbjct: 568  CGTSKDGESFIVEWNESE-GAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626

Query: 453  DASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSD 274
            DA QL TAI   G    S +I +NK  S+++ + ++  +    + +    L  ++++ S+
Sbjct: 627  DAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSE 686

Query: 273  VLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 139
              +     S+A+    A      +++S+ + ++   + ++  M+D
Sbjct: 687  SSKPAIN-SIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVD 730


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
            WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 34/165 (20%), Positives = 73/165 (44%)
 Frame = -3

Query: 633  CGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFL 454
            CG    G S ++    SE GA          +S G++Q    K+    A +   +    +
Sbjct: 568  CGTSKDGESFIVEWNESE-GAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626

Query: 453  DASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSD 274
            DA QL TAI   G    S +I +NK  S+++ + ++  +    + +    L  ++++ S+
Sbjct: 627  DAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSE 686

Query: 273  VLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 139
              +     S+A+    A      +++S+ + ++   + ++  M+D
Sbjct: 687  SSKPAIN-SIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVD 730


>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 79  LDELPGDDSLTGPVEREGQ 135
           LDELPG DSLT P   +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 79  LDELPGDDSLTGPVEREGQ 135
           LDELPG DSLT P   +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347


>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
            similar to DNA replication licensing factor MCM2 from
            {Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
            contains Pfam profile PF00493: MCM2/3/5 family
          Length = 928

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 381  KFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLA 241
            KF+ ++S + S LP    K  E  +K   YD  D     S T+FS A
Sbjct: 862  KFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKA 908


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 485 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 625
           L  ++   PY +C++P   SPT  ++M+    S   L   +  P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 485 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 625
           L  ++   PY +C++P   SPT  ++M+    S   L   +  P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557


>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 534

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 469 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 612
           E S ++ N+ D + +     TARF++H  H+D+   RF  T   H  Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370


>At2g36670.2 68415.m04498 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 566 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 682
           F APGSL    +T   P+C++  +  +   + NN  G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185


>At2g36670.1 68415.m04497 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 512

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 566 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 682
           F APGSL    +T   P+C++  +  +   + NN  G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 538 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 675
           F  H  HL  +  R AE    HF  T   ++A+ ++ G   K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581


>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
           protein
          Length = 210

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 463 YFLGRKSAGHCYPHLGIRV 407
           YF+  K+ GHCY  L +RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170


>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Cyanogenic Beta-Glucosidase
           (GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
           beta-glucosidase GI:10834547
          Length = 577

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 469 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 582
           E S ++ N++D + +     TARF +H  H+D    RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356


>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
           (IGPS) nearly identical to SP|P49572
          Length = 402

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 316 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGE 426
           + R+L +EG   +G+ +  LE    D+S TK +  GE
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGE 340


>At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing
           protein PBF protein, Triticum aestivum, EMBL:AJ012284
          Length = 210

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 475 SDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTS 618
           S+++S  N  ++ QS + T          D  S+     V +HFGY S
Sbjct: 87  SEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134


>At3g21200.1 68416.m02679 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 569 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 709
           S P SLR  +  TLDTP   + HKP    + + + +  SS G  S L+
Sbjct: 35  SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,329
Number of Sequences: 28952
Number of extensions: 295978
Number of successful extensions: 988
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -