Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l21r
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 155 3e-38
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 69 3e-12
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 61 9e-10
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr... 31 0.61
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa... 31 0.81
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 30 1.4
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr... 30 1.4
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 30 1.9
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 30 1.9
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 29 3.3
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 29 3.3
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 29 3.3
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 4.3
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 4.3
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 28 5.7
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 5.7
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 5.7
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 7.5
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 7.5
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 7.5
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 28 7.5
At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ... 27 9.9
At3g21200.1 68416.m02679 expressed protein 27 9.9
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 155 bits (376), Expect = 3e-38
Identities = 91/226 (40%), Positives = 140/226 (61%), Gaps = 13/226 (5%)
Frame = -3
Query: 690 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRN--RLSEPGAENIKVICVGDKSRGILQR 517
P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+ R
Sbjct: 98 PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157
Query: 516 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPL 337
I+ E+ + P + S LA IL + EF + +I+YNKF SVV++ + +
Sbjct: 158 DSKNDIVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTV 216
Query: 336 YTKKSIESAS----KLTAYDSLD-------SDVLQSYTEFSLASLLFYALKEGACSEQSS 190
+ + IE S KL DS + ++LQ+ EF + ++F A+ E ACSE +
Sbjct: 217 LSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGA 276
Query: 189 RMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALD 52
RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 277 RMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 322
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 68.9 bits (161), Expect = 3e-12
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Frame = -3
Query: 333 TKKSIESA--SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASK 160
TK +E S L ++ +L + L S + AL+E SE +SRM AM NA+
Sbjct: 289 TKLEVEKPEISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATD 348
Query: 159 NAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 55
NA E+ LT+ +NR RQA IT EL+EI++GA AL
Sbjct: 349 NAVELKKNLTMAYNRARQAKITGELLEIVAGAEAL 383
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = -3
Query: 660 VAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRGILQRLYGKHIISVA 487
V +T D+GLCG + V+K R+ E I VI VG K R + +
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR-RDEFDVDKC 198
Query: 486 NEIGRLPPTFLDASQLATAI--LTSGYEFGSGKIIYNKFKSVV 364
E G + PT +A +A + L E +++Y KF S+V
Sbjct: 199 IEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLV 241
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/84 (36%), Positives = 51/84 (60%)
Frame = -3
Query: 309 SKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 130
S + ++ +L + L S + AL+E SE ++RM+AM +AS NA ++ L+
Sbjct: 288 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLS 347
Query: 129 LTFNRTRQAVITRELIEIISGAAA 58
+ +NR RQA IT E++EI++GA A
Sbjct: 348 MVYNRKRQAKITGEILEIVAGANA 371
Score = 35.1 bits (77), Expect = 0.050
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = -3
Query: 672 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGDKSRG-ILQRLYGKH 502
K V +T DRGLCG + + K R+ E ++ VI VG K L+R Y
Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPYIP- 184
Query: 501 IISVANEIGRLPPTFLDASQLATAI--LTSGYEFGSGKIIYNKFKSVV 364
+ E G L PT +A +A + L E +++Y KF S+V
Sbjct: 185 -VDKYLEAGTL-PTAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLV 230
>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
protein kinase family protein
Length = 620
Score = 31.5 bits (68), Expect = 0.61
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%)
Frame = -3
Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538
ER E P D PK+ +A+ S RGL K+I + E + + VGD
Sbjct: 382 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAV-VGDF 440
Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361
L H+ +V IG + P +L + + GY ++I + ++
Sbjct: 441 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLA 500
Query: 360 YAQSDLPLYTKKSIESASKLTAYDSL-DSDVLQSYTEFSLASLLFYALKEGACSEQSS 190
+D + ++ K +SL D+++ Y E + L+ AL C++ S+
Sbjct: 501 RLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL---LCTQSSA 555
>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 31.1 bits (67), Expect = 0.81
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -3
Query: 468 PPTFLDASQLA----TAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL 301
P T + AS L T IL + + G + + ++ S Y+Q + +T +ES + +
Sbjct: 4 PGTEIKASDLTLLVITIILFAIFIVGLASVCF-RWTSRQFYSQESINPFTDSDVESRTSI 62
Query: 300 TAYDSLDSDVLQSYTEF 250
TA LD ++ S+ F
Sbjct: 63 TAVRGLDEAIINSFPTF 79
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Frame = -3
Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538
ER E PP D PK+ +A+ S RGL K+I + E + + VGD
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV-VGDF 435
Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGY 412
L H+ +V IG + P +L + + GY
Sbjct: 436 GLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGY 478
>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 601
Score = 30.3 bits (65), Expect = 1.4
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%)
Frame = -3
Query: 708 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 538
ER E P D PK+ +A+ S RGL K+I + E + + VGD
Sbjct: 363 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHLDVKAANILLDEEFEAV-VGDF 421
Query: 537 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 361
L H+ +V IG + P +L + + GY ++I + ++
Sbjct: 422 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLA 481
Query: 360 YAQSDLPLYTKKSIESASKLTAYDSL-DSDVLQSYTEFSLASLLFYALKEGACSEQSS 190
+D + ++ K +SL D+++ Y E + L+ AL C++ S+
Sbjct: 482 RLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMAL---LCTQSSA 536
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.9 bits (64), Expect = 1.9
Identities = 34/165 (20%), Positives = 73/165 (44%)
Frame = -3
Query: 633 CGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFL 454
CG G S ++ SE GA +S G++Q K+ A + + +
Sbjct: 568 CGTSKDGESFIVEWNESE-GAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626
Query: 453 DASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSD 274
DA QL TAI G S +I +NK S+++ + ++ + + + L ++++ S+
Sbjct: 627 DAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSE 686
Query: 273 VLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 139
+ S+A+ A +++S+ + ++ + ++ M+D
Sbjct: 687 SSKPAIN-SIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVD 730
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.9 bits (64), Expect = 1.9
Identities = 34/165 (20%), Positives = 73/165 (44%)
Frame = -3
Query: 633 CGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFL 454
CG G S ++ SE GA +S G++Q K+ A + + +
Sbjct: 568 CGTSKDGESFIVEWNESE-GAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626
Query: 453 DASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSD 274
DA QL TAI G S +I +NK S+++ + ++ + + + L ++++ S+
Sbjct: 627 DAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSE 686
Query: 273 VLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID 139
+ S+A+ A +++S+ + ++ + ++ M+D
Sbjct: 687 SSKPAIN-SIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVD 730
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 79 LDELPGDDSLTGPVEREGQ 135
LDELPG DSLT P +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 79 LDELPGDDSLTGPVEREGQ 135
LDELPG DSLT P +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 381 KFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLA 241
KF+ ++S + S LP K E +K YD D S T+FS A
Sbjct: 862 KFEEIISGSNSGLPTIEVKIEELQTKAKEYDIADLRPFFSSTDFSKA 908
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 485 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 625
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 485 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 625
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 469 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 612
E S ++ N+ D + + TARF++H H+D+ RF T H Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 566 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 682
F APGSL +T P+C++ + + + NN G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 566 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 682
F APGSL +T P+C++ + + + NN G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 538 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 675
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 463 YFLGRKSAGHCYPHLGIRV 407
YF+ K+ GHCY L +RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 469 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 582
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 316 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGE 426
+ R+L +EG +G+ + LE D+S TK + GE
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGE 340
>At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing
protein PBF protein, Triticum aestivum, EMBL:AJ012284
Length = 210
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 475 SDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTS 618
S+++S N ++ QS + T D S+ V +HFGY S
Sbjct: 87 SEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134
>At3g21200.1 68416.m02679 expressed protein
Length = 317
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 569 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 709
S P SLR + TLDTP + HKP + + + + SS G S L+
Sbjct: 35 SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,329
Number of Sequences: 28952
Number of extensions: 295978
Number of successful extensions: 988
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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