BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l21f (636 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 107 2e-24 SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.18 SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 0.98 SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 0.98 SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.2 SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 6.9 SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 6.9 SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 6.9 SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 9.1 SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.1 SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 9.1 >SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 301 Score = 107 bits (256), Expect = 2e-24 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%) Frame = +3 Query: 162 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 341 +H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + + Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83 Query: 342 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 518 + A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142 Query: 519 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAIL 626 L R + IG P+F +A Q+++ IL Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNIL 178 >SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces pombe|chr 1|||Manual Length = 580 Score = 30.7 bits (66), Expect = 0.18 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +3 Query: 360 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 524 PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC + Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128 Query: 525 LQRLYGKHIISVA 563 L +Y ++VA Sbjct: 129 LMTVYSLGELAVA 141 >SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 383 Score = 28.3 bits (60), Expect = 0.98 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = -2 Query: 479 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 345 ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155 >SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 383 Score = 28.3 bits (60), Expect = 0.98 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = -2 Query: 479 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 345 ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 25.8 bits (54), Expect = 5.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 393 AMTSDRGLCGAVHTGVSKVIRNRLSE 470 A+ SD +C V TG+S ++RLS+ Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216 >SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces pombe|chr 2|||Manual Length = 1309 Score = 25.4 bits (53), Expect = 6.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -2 Query: 620 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 468 SS ++ V + W + L +TND +++S+ DT R S DV+ F Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509 >SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 25.4 bits (53), Expect = 6.9 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = -2 Query: 611 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 438 +L + ES+++T+ +T + + D R+I D D + +ET+A F Y Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482 >SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein 3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1385 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 216 KSVKNIQKITQSMKMVSAAKYTRAERDLK 302 + VKN+Q S+K +SAA +TR +K Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986 >SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1373 Score = 25.0 bits (52), Expect = 9.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 177 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 299 +N KAI I K VKNI T ++++ RA + L Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111 >SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 995 Score = 25.0 bits (52), Expect = 9.1 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +3 Query: 366 EDDPKQLFVAMTSDRGLCGAVHT--GVS 443 + +P L VA+ SDR CG+++ GVS Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903 >SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|Schizosaccharomyces pombe|chr 1|||Manual Length = 590 Score = 25.0 bits (52), Expect = 9.1 Identities = 15/59 (25%), Positives = 25/59 (42%) Frame = +3 Query: 102 ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 278 + LG F VG A V P N+A + +R K+V ++ K+ + +Y Sbjct: 69 LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,877,814 Number of Sequences: 5004 Number of extensions: 61892 Number of successful extensions: 173 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 171 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 283719918 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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