Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l21f
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   2e-38
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   4.2  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   5.5  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   7.3  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  155 bits (377), Expect = 2e-38
 Identities = 68/145 (46%), Positives = 106/145 (73%)
 Frame = +3

Query: 201 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 380
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 381 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISV 560
            L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GDK++ IL R  GK+++  
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181

Query: 561 ANEIGRLPPTFLDASQLATAILTSG 635
             ++G+ PP F +A+ LA  IL +G
Sbjct: 182 FMDVGKKPPLFCEATFLAQEILDAG 206


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 263 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 168
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 569 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 390
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 389 KQ 384
            Q
Sbjct: 121 SQ 122


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 345 RAEVTPPEDDPKQLFVAMTSDRGLCG 422
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 110 NVGTLRTGCRHPSRGGGLP 166
           N+ TL TG R P  GGG+P
Sbjct: 26  NLNTLPTGARQPVPGGGVP 44


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 342  HRTVLHLHHRDEQLSGHAQHGC 277
            +R  LH+ H +++L  H  H C
Sbjct: 1068 NRNTLHVKHANQRLGSHGNHSC 1089


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,189,574
Number of Sequences: 59808
Number of extensions: 512312
Number of successful extensions: 1325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)