Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l21f
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 75 5e-14
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 61 5e-10
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 56 2e-08
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 29 2.6
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 3.4
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 3.4
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 28 4.5
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 4.5
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 4.5
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr... 28 4.5
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 6.0
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 6.0
At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ... 27 7.9
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 27 7.9
At3g21200.1 68416.m02679 expressed protein 27 7.9
At2g13450.1 68415.m01484 hypothetical protein similar to zinc fi... 27 7.9
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 74.5 bits (175), Expect = 5e-14
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Frame = +3
Query: 177 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEV 356
R+++T + + R+KSVKNIQKIT++MKMV+A+K + + +R + F
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGD 96
Query: 357 TPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDKSRGILQ 530
P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+K++ I+
Sbjct: 97 NPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMF 156
Query: 531 RLYGKHIISVANEIGRLPPTFLDASQLATAIL 626
R I+ E+ + P + S LA IL
Sbjct: 157 RDSKNDIVLSVTELNKNPLNYAQVSVLADDIL 188
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 61.3 bits (142), Expect = 5e-10
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Frame = +3
Query: 186 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 365
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 110
Query: 366 EDD-----------PKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVG 506
DD K V +T DRGLCG + + K R+ E ++ VI VG
Sbjct: 111 TDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVG 170
Query: 507 DKSRG-ILQRLY 539
K L+R Y
Sbjct: 171 KKGNSYFLRRPY 182
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 56.0 bits (129), Expect = 2e-08
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Frame = +3
Query: 186 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTP 362
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+ Y +
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQ 120
Query: 363 PEDDPKQL----------FVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVG 506
ED L V +T D+GLCG + V+K R+ E I VI VG
Sbjct: 121 LEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVG 180
Query: 507 DKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILT 629
K R + + E G + PT +A +A + +
Sbjct: 181 KKGNAYFSR-RDEFDVDKCIEGGGVFPTTKEAQVIADDVFS 220
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 29.1 bits (62), Expect = 2.6
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +3
Query: 342 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 512
ER E PP D PK+ +A+ S RGL K+I + E + + VGD
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV-VGDF 435
Query: 513 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQ 608
L H+ +V IG + P +L +
Sbjct: 436 GLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGK 468
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 565 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 425
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 565 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCT 425
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 581 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 438
E S ++ N+ D + + TARF++H H+D+ RF T H Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 484 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 368
F APGSL +T P+C++ + + + NN G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 484 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 368
F APGSL +T P+C++ + + + NN G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190
>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
protein kinase family protein
Length = 620
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Frame = +3
Query: 342 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA---ENIKVICVGDK 512
ER E P D PK+ +A+ S RGL K+I + E + + VGD
Sbjct: 382 ERPEGNPALDWPKRKHIALGSARGLAYLHDHCDQKIIHRDVKAANILLDEEFEAV-VGDF 440
Query: 513 SRGILQRLYGKHI-ISVANEIGRLPPTFLDASQ 608
L H+ +V IG + P +L +
Sbjct: 441 GLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGK 473
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 512 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 375
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 581 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 468
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing
protein PBF protein, Triticum aestivum, EMBL:AJ012284
Length = 210
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 575 SDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTS 432
S+++S N ++ QS + T D S+ V +HFGY S
Sbjct: 87 SEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 75 TSRRKNVAGRQFLGDARKEN 16
+S+RKN+ G +F DARK N
Sbjct: 279 SSKRKNMGGPRFKDDARKSN 298
>At3g21200.1 68416.m02679 expressed protein
Length = 317
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 481 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 341
S P SLR + TLDTP + HKP + + + + SS G S L+
Sbjct: 35 SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81
>At2g13450.1 68415.m01484 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 394
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 75 TSRRKNVAGRQFLGDARKEN 16
+S+RKN+ G +F DARK N
Sbjct: 359 SSKRKNMGGPKFKDDARKSN 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,709
Number of Sequences: 28952
Number of extensions: 342527
Number of successful extensions: 874
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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