BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l20r (758 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 28 6.3 >Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical protein Y70C5C.2 protein. Length = 414 Score = 28.3 bits (60), Expect = 6.3 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%) Frame = -2 Query: 580 IVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKH 425 I FP+++ I + NY+ +YN+ LK T+ N+ + DG + K+ Sbjct: 312 ITSPNFPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKY 371 Query: 424 TELVSWKFITLWENNR--VYFKAHNT 353 + W F + N V F++++T Sbjct: 372 SGYYEWPFFNVSTGNSMLVTFRSNST 397 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,636,067 Number of Sequences: 27780 Number of extensions: 317881 Number of successful extensions: 918 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 918 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1809061256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -