Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l19r
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.08c |||traub transciption factor family protein |Schizos... 92 8e-20
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 32 0.072
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 31 0.22
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 0.29
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 28 1.6
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 1.6
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.1
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 27 2.1
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.7
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 27 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 4.7
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 4.7
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 26 6.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 6.3
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 6.3
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 8.3
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 25 8.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 8.3
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 8.3
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 91.9 bits (218), Expect = 8e-20
Identities = 61/212 (28%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Frame = -1
Query: 627 LDDYEKEISISHKAFKPFRDASIQKWNEKTRLA---TASNIKNAPTNTVLQQISYILSDR 457
L++ E++ + +++ ++ KW+ + + + SN A +++QQI + ++
Sbjct: 248 LEEIALEMNNLDDSLNEWKNDTLTKWHNRVQAVQGISQSNKFKALNQSIVQQIENSMINK 307
Query: 456 DKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLREL 277
L+ RT+ + YS D T N PEI++D DFY LL++
Sbjct: 308 KDLVERTR--------IDYS-------DPNNKTFN--------PEIYNDTDFYQSLLKDF 344
Query: 276 IECKSADISDPVQLSRQWIALQQMRSKMKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCL 97
I + AD + + +W+A ++ + K K VDTKA+KGRKI+Y VH++L N+MAP +
Sbjct: 345 INSRMADSTRDGTV--RWMATKKQKQK-KENVDTKASKGRKIRYHVHDKLQNFMAPIEVT 401
Query: 96 TWTEESTNELYNSLFGKMFEHNNTGLGGDVGN 1
W +E T +L++SL G+ + + T + N
Sbjct: 402 VWPDEQTEDLFSSLLGQQLDLSETANDTNTSN 433
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 32.3 bits (70), Expect = 0.072
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = -1
Query: 717 DTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFK--PFRD---ASIQK 553
+ +DES +KN E +KSN + KRK D E+E ++S K K P D A +++
Sbjct: 6 ENNKDESISTKNALE-EKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLEDKGNAEVKE 64
Query: 552 WNEKTR 535
+ E T+
Sbjct: 65 FKETTK 70
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 30.7 bits (66), Expect = 0.22
Identities = 33/159 (20%), Positives = 67/159 (42%)
Frame = -1
Query: 699 SPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKTRLATAS 520
S + E K ++ ++++ + EK + + +A K + ++ + L T
Sbjct: 87 SGIKSTLGERLKKDSQELAQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQVESL-TQD 145
Query: 519 NIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDD 340
N L + + +LS + K R R E+++ S AV + E++ + +
Sbjct: 146 ITDLRQQNASLVEENQLLSTQSKQWERRA--RDEHEMQE-SLAVRLADCEEQLARETERQ 202
Query: 339 DEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQW 223
++Y EI HQL EL K++ + +L+R W
Sbjct: 203 EQYEVEIQRHLTNQHQLEIELESTKASHTENLGELTRNW 241
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.3 bits (65), Expect = 0.29
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Frame = -1
Query: 717 DTEEDESPVSKNTNESKKSNAPANL--PKKRKLDD--YEKEISISHKAFKPFRDASIQKW 550
+ E+ E PV KN SKK+ +P N +DD ++E S S + K + S K
Sbjct: 102 EEEDSEKPVRKNKKSSKKA-SPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSK- 159
Query: 549 NEKTRLATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTE-YDIVGYSKAVNNDND 373
++ + +I+++ + ++ S D K R+T+ K + + ++ N DND
Sbjct: 160 DDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDND 219
Query: 372 SEKVTKNRKD 343
+ N+ D
Sbjct: 220 ANAAPLNKTD 229
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 720 SDTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEK 541
+ + S V K +N S ++P+ P + DYEKE S + K + + S++
Sbjct: 115 NSSRRSSSSVGKLSNVSNMQSSPSKDPFVSQ--DYEKESISSSQFSKKYSEGSLKSQQSN 172
Query: 540 TR 535
TR
Sbjct: 173 TR 174
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 538 SFFIPFLNRCISEWFEGFMRY*NXXXXXXXXXXLWK 645
S FIP + R + +WF+ F RY LW+
Sbjct: 612 SSFIPTIMRQLLDWFKNFQRYSTQKLASSFERELWE 647
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 56 CLEKCSNIIIQDWVV 12
C KCSNI+ QDW V
Sbjct: 553 CKHKCSNIMEQDWFV 567
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 552 WNEKTRLATASNIKNAPTNTVLQQISYILS 463
W E T +A AS NA VL + SY+LS
Sbjct: 761 WKELTSVAEASKFANAVGYPVLVRPSYVLS 790
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = -1
Query: 399 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWI 220
S +N + +K+ K D +PEIF+ ++ + + L+ D L R
Sbjct: 142 SSESDNQPEKKKIKKQNPTDLVSVPEIFEQSN--PKPVVHLVVTGHVDSGKSTMLGRIMF 199
Query: 219 ALQQMRSKMKRKVDTKATKGRK 154
L ++ S+ +K+ +A K
Sbjct: 200 ELGEINSRSMQKLHNEAANSGK 221
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = -1
Query: 720 SDTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYE--KEISISHKAFKPFRDASIQKWN 547
+D D +N+NES KS N DY+ ++ + + F P + A K N
Sbjct: 30 TDRARDRKRQKRNSNESSKSTVKRNSGTNGASTDYKNSQKEKVINPVFDPRKPAHELKGN 89
Query: 546 EKTRLATASNIKNAPTNTVLQQISYILSD 460
++ S + Q + L D
Sbjct: 90 KRDNTFVTSLFTGDDSEHFSQDVGQNLED 118
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -1
Query: 534 LATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYD--IVGYSKAVNNDNDSEKV 361
LA+ ++ N ++ I+ D DKL+ + K+ +YD + K + S K
Sbjct: 117 LASEMDVINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDKSLKD 176
Query: 360 TKNRKDDDEYIPEIFDDNDFYHQLLRE 280
K + + + + ++Y+++L+E
Sbjct: 177 EKKLYEAETAFEQSSQEYEYYNEMLKE 203
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = -1
Query: 717 DTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKT 538
DT+E S SK +++ ++ +R+++ +EK I + ++ F++ + +E T
Sbjct: 550 DTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEIT 609
Query: 537 RLATASNIK 511
+L+ N K
Sbjct: 610 QLSERYNDK 618
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.6
Identities = 38/176 (21%), Positives = 62/176 (35%), Gaps = 2/176 (1%)
Frame = -1
Query: 723 PSDTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNE 544
PS + PV+ +T K NAP K+ + + + + R + NE
Sbjct: 40 PSSVTSNSKPVASSTAAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHT----NE 95
Query: 543 KTRLATASNIKNAPTNTVLQ--QISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDS 370
K T S I PT Q + +L + K+ R Q +R + N S
Sbjct: 96 KP--FTCSEIDGLPTGCGRQFSRRDLLLRHQQKIHRNPQPRRRRRSTTALPNP-SLSNVS 152
Query: 369 EKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWIALQQMR 202
T +P+ + F + L ++ + A+ S S W+ QQ R
Sbjct: 153 VSTTNLASKPVISLPQADSIDKFRYPKLHAALQAQLANNSG--SFSASWLQAQQQR 206
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 495 TVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNND 379
TV + +S +L+D ++RR+ L V + KA +ND
Sbjct: 592 TVERHVSTLLADSSSIVRRSLLNALAPLCVFFGKAKSND 630
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 146 YLIFRPFVALVSTFLFILLLICC 214
Y + P++ALVS F+ + +CC
Sbjct: 239 YTLLYPWIALVSAFVAETMTLCC 261
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 10 ITTQSCIIMFEHFSKQRVVQFIRAF 84
I + C++ +E FS ++ VQF ++F
Sbjct: 139 IFLRKCVVEYEQFSFEQGVQFFKSF 163
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 657 APANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKTRLATASNIKNAPTNTVL 487
A LP+ R+ D Y ++ KA + + ++ TRLA A + + PT T +
Sbjct: 715 ANERLPRSRRDDPYWTDLLERLKAVQLSHQNNYREPIRATRLALAGALPSTPTATTI 771
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 420 EYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDND 304
+ D G A+NN+++S+ D D + FDD D
Sbjct: 448 DVDFTGKIGAINNEDESDNEEVAFADSDSDLGGQFDDED 486
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 720 SDTEEDESPVSKNTNESKKSNAPANLPKKRKL 625
S+++ED+ P+ K SKK+ + ++ K+ K+
Sbjct: 52 SESDEDDIPIRKRRASSKKNMSNSSSKKRAKV 83
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 399 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADIS 250
++A N + +++NRK DD+ P F + + +E I+ D++
Sbjct: 126 NRASNTVDLDAIISRNRKPDDDEFPSSFPSEEELQEPEQENIDSDDEDLA 175
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 537 RLATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIV---GYSK 394
R T+ + +A TN+++ + SD D+ Q+ T+ + + G+SK
Sbjct: 47 RAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSK 97
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -1
Query: 198 KMKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCLTWTEESTNELYNSL 55
++ R V+ + K ++ ++NQ++NY ++ TE +YN L
Sbjct: 190 QVMRDVELEIYKDSPLE-TLYNQIINYAETDEIRRLTESKLLHMYNKL 236
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/54 (22%), Positives = 29/54 (53%)
Frame = -1
Query: 399 SKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQ 238
S+A+N + ++N +D++ E DD+ + Q + + K+ + ++PV+
Sbjct: 703 SRAINTILPFSEASQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVE 756
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,062
Number of Sequences: 5004
Number of extensions: 60719
Number of successful extensions: 310
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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