BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l19r (723 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 3.9 AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 3.9 EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 8.9 EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 8.9 DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein ... 21 8.9 AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 8.9 AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein ... 21 8.9 >AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 593 Score = 22.6 bits (46), Expect = 3.9 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 7/19 (36%) Frame = +1 Query: 640 WKVCW-------CIGLFRF 675 WK+CW C+G+F F Sbjct: 491 WKICWTITTPAICVGVFTF 509 >AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter transporter-1B protein. Length = 646 Score = 22.6 bits (46), Expect = 3.9 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 7/19 (36%) Frame = +1 Query: 640 WKVCW-------CIGLFRF 675 WK+CW C+G+F F Sbjct: 544 WKICWTITTPAICVGVFTF 562 >EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. Length = 686 Score = 21.4 bits (43), Expect = 8.9 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -3 Query: 97 NMDRRKHE*IVQLFVW 50 NMD K + +VQ F+W Sbjct: 68 NMDMYKDKNVVQKFLW 83 >EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. Length = 686 Score = 21.4 bits (43), Expect = 8.9 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -3 Query: 97 NMDRRKHE*IVQLFVW 50 NMD K + +VQ F+W Sbjct: 68 NMDMYKDKNVVQKFLW 83 >DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein 6 protein. Length = 125 Score = 21.4 bits (43), Expect = 8.9 Identities = 9/34 (26%), Positives = 16/34 (47%) Frame = -1 Query: 135 NQLVNYMAPEKCLTWTEESTNELYNSLFGKMFEH 34 N++VNY+ ++ W S + K +EH Sbjct: 84 NKVVNYLKTKRPKDWERLSAKYDSTGEYKKRYEH 117 >AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor protein. Length = 501 Score = 21.4 bits (43), Expect = 8.9 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = +3 Query: 369 PSHCHC*QLYYSQLYHT 419 PSHC Q ++ Q+Y T Sbjct: 191 PSHCVVCQNFFYQIYAT 207 >AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein protein. Length = 125 Score = 21.4 bits (43), Expect = 8.9 Identities = 9/34 (26%), Positives = 16/34 (47%) Frame = -1 Query: 135 NQLVNYMAPEKCLTWTEESTNELYNSLFGKMFEH 34 N++VNY+ ++ W S + K +EH Sbjct: 84 NKVVNYLKTKRPKDWERLSAKYDSTGEYKKRYEH 117 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 192,059 Number of Sequences: 438 Number of extensions: 3952 Number of successful extensions: 12 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22413960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -