Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l19r
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.9  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   8.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   8.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 7/19 (36%)
 Frame = +1

Query: 640 WKVCW-------CIGLFRF 675
           WK+CW       C+G+F F
Sbjct: 491 WKICWTITTPAICVGVFTF 509


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 7/19 (36%)
 Frame = +1

Query: 640 WKVCW-------CIGLFRF 675
           WK+CW       C+G+F F
Sbjct: 544 WKICWTITTPAICVGVFTF 562


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 97  NMDRRKHE*IVQLFVW 50
           NMD  K + +VQ F+W
Sbjct: 68  NMDMYKDKNVVQKFLW 83


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 97  NMDRRKHE*IVQLFVW 50
           NMD  K + +VQ F+W
Sbjct: 68  NMDMYKDKNVVQKFLW 83


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 135 NQLVNYMAPEKCLTWTEESTNELYNSLFGKMFEH 34
           N++VNY+  ++   W   S        + K +EH
Sbjct: 84  NKVVNYLKTKRPKDWERLSAKYDSTGEYKKRYEH 117


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 369 PSHCHC*QLYYSQLYHT 419
           PSHC   Q ++ Q+Y T
Sbjct: 191 PSHCVVCQNFFYQIYAT 207


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 135 NQLVNYMAPEKCLTWTEESTNELYNSLFGKMFEH 34
           N++VNY+  ++   W   S        + K +EH
Sbjct: 84  NKVVNYLKTKRPKDWERLSAKYDSTGEYKKRYEH 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,059
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)