Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10l19r
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 91 7e-19
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 33 0.25
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 32 0.33
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 31 0.58
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 31 0.58
At5g38800.1 68418.m04691 bZIP transcription factor family protei... 30 1.4
At2g22795.1 68415.m02704 expressed protein 30 1.4
At4g36630.2 68417.m05198 expressed protein 30 1.8
At4g36630.1 68417.m05199 expressed protein 30 1.8
At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containi... 30 1.8
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex... 29 2.4
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr... 29 3.1
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ... 29 3.1
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP... 29 3.1
At5g60030.1 68418.m07527 expressed protein 29 4.1
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 4.1
At5g23490.1 68418.m02756 expressed protein 28 5.5
At1g13130.1 68414.m01522 glycosyl hydrolase family 5 protein / c... 28 5.5
At5g66770.1 68418.m08416 scarecrow transcription factor family p... 28 7.2
At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ... 28 7.2
At4g31350.1 68417.m04446 expressed protein contains Pfam profile... 28 7.2
At2g35050.1 68415.m04300 protein kinase family protein contains ... 28 7.2
At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical... 28 7.2
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 9.5
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 91.1 bits (216), Expect = 7e-19
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 8/229 (3%)
Frame = -1
Query: 711 EEDESPVSKNTNESKKSNAPANLPK-KRKLDDYEK--EISISHKAFKPFRDASIQKWNEK 541
E E+ KN + ++ NA A+ K +D ++ IS K FR+ ++ KW K
Sbjct: 212 ELQEALFEKNPSVDQQVNATASEESNKSDAEDSDEWQRISDLQKRMSVFRNKAVDKWQRK 271
Query: 540 TRLAT-ASNIK---NAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVG-YSKAVNNDN 376
T++ T A+ IK +A V +Q++ + D ++I++ Q R+ + G + N
Sbjct: 272 TQVTTGAAAIKGKLHAFNQNVSEQVASYMRDPSRMIKQMQQSRSTVAVFGTVPQEAMEPN 331
Query: 375 DSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWIALQQMRSK 196
EK +E PE+ +D +FY QLL+E +E DP + +++ ++K
Sbjct: 332 PEEK-------QEEGDPELVEDAEFYRQLLKEFLET-----IDPASSEAAFYEMKKFQTK 379
Query: 195 MKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCLTWTEESTNELYNSLFG 49
++ VD +A+K RKI+Y VH ++VN+MAP +T +L +LFG
Sbjct: 380 KRKVVDRRASKSRKIRYNVHEKIVNFMAPRPAK--IPPNTADLLKNLFG 426
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 32.7 bits (71), Expect = 0.25
Identities = 28/119 (23%), Positives = 53/119 (44%)
Frame = -1
Query: 723 PSDTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNE 544
PS E+ E+ + ESK S P R LD YE +I K + ++ + E
Sbjct: 1015 PSAREKVEAEFRQKI-ESKTSEIERTAPNLRALDQYE---AIQEKEKQVSQEFEAARKEE 1070
Query: 543 KTRLATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSE 367
K + +K ++ ++I S+ DK+ + QL ++ +G + +N +N+ +
Sbjct: 1071 KQVADAFNTVKQKRYELFMEAFNHIASNIDKIYK--QLTKSNTHPLGGTAYLNLENEDD 1127
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 32.3 bits (70), Expect = 0.33
Identities = 31/128 (24%), Positives = 56/128 (43%)
Frame = -1
Query: 687 KNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKTRLATASNIKN 508
K TN+ KKS++ +N P KR L + +S K FK + S+ K K ++
Sbjct: 100 KKTNDEKKSSSTSNKP-KRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTE 158
Query: 507 APTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYI 328
L + + + ++ +K + E D K ++ +D+E+ K DDDE
Sbjct: 159 EEKKVYLDKAAELKAEYNKSLESNDADEEEED---EEKQSDDVDDAEE--KQVDDDDEVE 213
Query: 327 PEIFDDND 304
+ ++ D
Sbjct: 214 EKEVENTD 221
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 31.5 bits (68), Expect = 0.58
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Frame = -1
Query: 711 EEDESPVSKNTNESKKSNAPANLPK-KRKLDDYEKEISISHKAFKPFRDASIQKWNEKTR 535
+ D + E+ A N+ K K+K + E ++ ++ + DA I+ ++ +
Sbjct: 66 KRDHEAAANGNTEANVVEAVENVKKDKKKKKNKETKVEVTEEEKVKETDAVIEDGVKEKK 125
Query: 534 LATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTK 355
+ +K V ++ ++ D K ++ + K SK+V D+D EKV+K
Sbjct: 126 KKKETKVKVTEEEKV-KETDAVIEDGVKEKKKKKSK---------SKSVEADDDKEKVSK 175
Query: 354 NRK-DDDEYIPEIFDDND 304
RK + E E +D+D
Sbjct: 176 KRKRSEPEETKEETEDDD 193
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 31.5 bits (68), Expect = 0.58
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = -1
Query: 456 DKLIRRTQLKRTEYDIVGYSKAV---NNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQ-L 289
++L+ RT+ + D + + D + E + +KD + EIFD + Y++
Sbjct: 507 ERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDS 566
Query: 288 LRELIECKSADISDPVQLSRQWIALQQMR---SKMKRKVDTKATKGRKIKYVVHNQLVNY 118
EL E ++ + D + + + L +R SK+ +KV + R+ + + +Y
Sbjct: 567 TPELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTEYEEYTDY 626
Query: 117 MAPEKCLT 94
+ PE+ T
Sbjct: 627 LFPEESET 634
>At5g38800.1 68418.m04691 bZIP transcription factor family protein
similar to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]; contains PFAM profile: bZIP
transcription factor PF00170
Length = 165
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -1
Query: 396 KAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLREL---IECKSADISDPVQLSRQ 226
K N ++ + ++ DE ++ D HQLLR+L +E + I + VQL +
Sbjct: 77 KISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNCVLESQEKVIEENVQLKEE 136
Query: 225 WIALQQMRSKMK 190
L+QM S M+
Sbjct: 137 TTELKQMISDMQ 148
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/136 (19%), Positives = 59/136 (43%)
Frame = -1
Query: 714 TEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKTR 535
+ ++E+ +N K+ +AP K+++ + EKE S S + K ++ K +
Sbjct: 572 SSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEESASQEETKE------KETETKEK 625
Query: 534 LATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTK 355
++SN NT ++ + + K T + ++ + V ++ ++ SEK
Sbjct: 626 EESSSNESQENVNTESEKKEQVEENEKKTDEDTS-ESSKENSVSDTEQKQSEETSEKEES 684
Query: 354 NRKDDDEYIPEIFDDN 307
N+ + E E D +
Sbjct: 685 NKNGETEVTQEQSDSS 700
>At4g36630.2 68417.m05198 expressed protein
Length = 950
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 513 KNAPTNTVLQQISYILSDRDKLIRRTQLKRTE---YDIVGYSKAVNNDNDSEKVTKNR 349
K NT++ I Y+L R +I + + TE D VG + N+ + S+K +K R
Sbjct: 429 KKMSHNTLMALIKYLLKRRPAVIEKATSEGTEEVISDAVGKTYGANDSSKSKKSSKGR 486
>At4g36630.1 68417.m05199 expressed protein
Length = 519
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1
Query: 513 KNAPTNTVLQQISYILSDRDKLIRRTQLKRTE---YDIVGYSKAVNNDNDSEKVTKNR 349
K NT++ I Y+L R +I + + TE D VG + N+ + S+K +K R
Sbjct: 429 KKMSHNTLMALIKYLLKRRPAVIEKATSEGTEEVISDAVGKTYGANDSSKSKKSSKGR 486
>At1g66345.1 68414.m07535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 544
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -1
Query: 450 LIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIE 271
L++R +K D +GYS V + RK DE + F N F + + +
Sbjct: 291 LLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVC- 349
Query: 270 CKSADISDPVQL 235
C+ D+ + +L
Sbjct: 350 CEKGDVKEAERL 361
>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510
Length = 1075
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 617 MKKKFQYLIKPSNHSEMHLFRNGMKKLG*LQHRTLKMLQRTQFCNKFHISYLTEI 453
+K +I H+E ++ G+ L LK Q+++FCN+F+ SY +I
Sbjct: 874 LKLVMDSIIWAFRHTERNIAETGLNLL----LEMLKNFQQSEFCNQFYRSYFMQI 924
>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
protein / kinesin motor family protein kinesin,
Syncephalastrum racemosum, AJ225894
Length = 941
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/91 (15%), Positives = 45/91 (49%)
Frame = -1
Query: 453 KLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELI 274
+L++ QL++ + D++ + KA+ + + + + ++ Y ++ D + Y + + EL+
Sbjct: 523 ELLKDLQLQKDQCDLM-HDKAIQLEMKLKNTKQQQLENSAYEAKLADTSQVYEKKIAELV 581
Query: 273 ECKSADISDPVQLSRQWIALQQMRSKMKRKV 181
+ + + Q ++ + SK ++ +
Sbjct: 582 QRVEDEQARSTNAEHQLTEMKNILSKQQKSI 612
>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1076
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 578 HSEMHLFRNGMKKLG*LQHRTLKMLQRTQFCNKFHISYLTEI 453
H+E ++ G+ L LK Q++ FCNKF+ +Y +I
Sbjct: 888 HTERNIAETGLNLL----LEMLKNFQKSDFCNKFYQTYFLQI 925
>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
TBP-interacting protein TIP120 GI:1799570 from [Rattus
norvegicus]
Length = 1219
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/106 (20%), Positives = 45/106 (42%)
Frame = -1
Query: 387 NNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWIALQQ 208
N + D++ T ++DDE E DD D ++ R +C + I +SR + +
Sbjct: 314 NMEEDTDNETLEDEEDDESANEYTDDEDASWKVRRAAAKCLAGLI-----VSRSEMLTKV 368
Query: 207 MRSKMKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCLTWTEESTNE 70
+ + +D + +K V N ++ + +T + T+E
Sbjct: 369 YQEACPKLIDRFKEREENVKMDVFNTFIDLLRQTGNVTKGQTDTDE 414
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 717 DTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEK 541
D ++ + +SKK+N + +K KL+D +K I K D +K EK
Sbjct: 175 DEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVVDEKEKEK 233
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Frame = -1
Query: 465 SDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLL 286
+DR + ++ K + D+V + + ++ S ++ + +K+ DE ++ D+ + +L
Sbjct: 180 ADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDE---DVVDEKE-KEKLE 235
Query: 285 RELIECKSADISDPVQLSRQWIALQQMRSKMKRKVDTK-ATKGRKIK 148
E + + S + I ++ +SK KRK D + ++ RK K
Sbjct: 236 DEQRSGERKKEKKKKRKSDEEIVSEERKSKKKRKSDEEMGSEERKSK 282
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 149 LIFRPFVALVSTF--LFILLLICCRAIHCLLS*TGSDMSADL 268
L F+ + VS F L +LLL+CC + CL S T S +S++L
Sbjct: 223 LKFKLNITKVSAFNTLLLLLLLCCNILTCLTSHT-SVLSSNL 263
>At5g23490.1 68418.m02756 expressed protein
Length = 729
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 450 LIRRTQLKRTEYDIVGYSKAVNNDNDS 370
L+ T+LK +EY + + VN+ NDS
Sbjct: 333 LLTETKLKESEYQLAPWQSDVNHSNDS 359
>At1g13130.1 68414.m01522 glycosyl hydrolase family 5 protein /
cellulase family protein
Length = 552
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 139 YYIFNLPAFCSFSIHFPFHLTPHLL*SYPLSTQLNWI 249
+ F P FC F + P++ SYPLST WI
Sbjct: 8 HMFFIFPFFCFFFSFIAQNTVPNM--SYPLSTSSRWI 42
>At5g66770.1 68418.m08416 scarecrow transcription factor family
protein
Length = 584
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/93 (24%), Positives = 38/93 (40%)
Frame = -1
Query: 348 KDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWIALQQMRSKMKRKVDTKA 169
K+D E DD D LL+ + +C SDP + S+ L Q+R + D
Sbjct: 198 KEDPETNDSEDDDFDLEPPLLKAIYDCARISDSDPNEASK---TLLQIRESVSELGDPT- 253
Query: 168 TKGRKIKYVVHNQLVNYMAPEKCLTWTEESTNE 70
++ + L N ++P T + S+ E
Sbjct: 254 ---ERVAFYFTEALSNRLSPNSPATSSSSSSTE 283
>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
ankyrin repeat family protein similar to patsas protein
[Drosophila melanogaster] GI:6002770; contains Pfam
profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
finger domain
Length = 592
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -1
Query: 387 NNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQL---SRQWIA 217
N ++ S+ + + +D Y + D + H+L +EC+ + +S+P L + QW A
Sbjct: 18 NGESSSKGIEEESLKNDVYTAAAYGDLEKLHRL----VECEGSSVSEPDALGYYALQWSA 73
Query: 216 L 214
L
Sbjct: 74 L 74
>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 711
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 292 LMVEIII-IKYFRYVFIIIFPVLSYLFRVIVIVDSFTIANYIILCSF 429
L++ +I + F Y +++F VL +L+R IV + +A ++ C F
Sbjct: 651 LLIHLISRVSKFSYYHVLVF-VLFFLYRFIVAIGCGFVALVLLFCLF 696
>At2g35050.1 68415.m04300 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 27.9 bits (59), Expect = 7.2
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Frame = -1
Query: 723 PSDTEEDESPVSKNTNESKKSNAPANLPKK--RKLDDYEKEISISHKAFKPFRDASIQKW 550
P D ++E+P+ T+ S + + L +K RK +D+ E ++S K K ++ S +
Sbjct: 521 PDDLPKEEAPIVTQTSSSTPDPSSSTLSEKSLRKSEDH-VENNLSAKEPKMRKEHSTTRV 579
Query: 549 NEKTRLATASNIKNAPTNTVLQQ--ISYILSDR----------DKLIRRTQLKRTEYDIV 406
NE + +++ S+ P + ++ IS +S+ +K +R +Q K +D
Sbjct: 580 NEYS-VSSVSSDSMVPDQALKEEAPISMKISNSTPDPKSLVYPEKSLRTSQEKTGAFDTT 638
Query: 405 GYSKAVNNDN 376
N DN
Sbjct: 639 NEGMKKNQDN 648
>At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical to
ERF domain protein 10 GI:11414990 from [Arabidopsis
thaliana]
Length = 245
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 264 SADISDPVQLSRQWIALQQMRSKMKRKVDTKATKGRKIKYVVHNQLVNY 118
+A+I DPV+ R W+ + R D+ A + R K + L+ Y
Sbjct: 65 AAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPLIGY 113
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -1
Query: 549 NEKTRLATASNIK-NAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDND 373
+E+ T++N+ ++ + + +S S+ + R+ +K + VG V D+D
Sbjct: 3 HEQDDPGTSTNVGVDSSVDDSMASLSICDSEHPNIYRQDIVKNKKTGSVGVVSEVAGDSD 62
Query: 372 SEKVTKNRKDDDEYIPEIFDDND 304
S+ + ++DD+ + DD++
Sbjct: 63 SDSDISDEEEDDDDDEDNDDDDE 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,286
Number of Sequences: 28952
Number of extensions: 292537
Number of successful extensions: 1283
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -