Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l19f
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.87 
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    28   1.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 266 MAASSSLSEDPKSARETVCGFVPNTWSSSISTRGFSVSASATLSDNI 126
           M++SSS S  P S+  T+     +  SSS S+   S  +S++ S  +
Sbjct: 326 MSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTV 372


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 260 ASSSLSEDPKSARETVCGFV---PNTWSSSISTRGFSVS 153
           +++S  E   +A+   C FV   P  WS+ + TRG  +S
Sbjct: 583 SNASQEEIEDAAKRANCSFVLSFPEKWSTQVGTRGLQLS 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,023
Number of Sequences: 5004
Number of extensions: 23377
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)