Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10l19f
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31463| Best HMM Match : ABC2_membrane (HMM E-Value=3.1)             28   4.9  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_16715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    27   8.5  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            27   8.5  

>SB_31463| Best HMM Match : ABC2_membrane (HMM E-Value=3.1)
          Length = 268

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 420 IILTSFIIVTFISRLITVITKLTQIFSRYYLTFVL 316
           II T  II+T I   IT+IT +T I +   +T ++
Sbjct: 64  IITTIIIIITIIITTITIITIITIIITIIIITIII 98


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -2

Query: 426 VFIILTSFIIVTFISRLITVIT 361
           V II TS II+T IS +IT++T
Sbjct: 71  VIIITTSVIIITIISVIITIMT 92


>SB_16715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 441 FFRGSVFIILTSFIIVTFISRLITVITKLTQIFSRYYLTFVL 316
           FF   V I+LT+ IIV  I  +IT+I  +  IF    +  V+
Sbjct: 35  FFSLCVDILLTNIIIVIVIIIIITIIIIIVIIFITIIIVIVI 76


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 426 VFIILTSFIIVTFISRLITVITKLTQIFSRYYLTFVLFTDFAQ*INVT 283
           +  I++  II+  I  +I++IT +  +    Y+T ++F      INVT
Sbjct: 231 IITIISLIIIIIIIIVIISMITIIISLIIIIYVTHIIFNIIIIVINVT 278


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 242 EDPKSARETVCGFVPNTWSSSISTRGFSVSASATLSDNIIFTDFLVFAF 96
           EDPKS R+    F  + W+S  +     + A   L    IF  FL F F
Sbjct: 67  EDPKSWRKVRPAFKSSLWTSFKTVFATQILAGTGLGLLAIFITFLDFNF 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,012
Number of Sequences: 59808
Number of extensions: 163181
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)