BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10l19f (586 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_31463| Best HMM Match : ABC2_membrane (HMM E-Value=3.1) 28 4.9 SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9 SB_16715| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5 SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2) 27 8.5 SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1) 27 8.5 >SB_31463| Best HMM Match : ABC2_membrane (HMM E-Value=3.1) Length = 268 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 420 IILTSFIIVTFISRLITVITKLTQIFSRYYLTFVL 316 II T II+T I IT+IT +T I + +T ++ Sbjct: 64 IITTIIIIITIIITTITIITIITIIITIIIITIII 98 >SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 708 Score = 28.3 bits (60), Expect = 4.9 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 426 VFIILTSFIIVTFISRLITVIT 361 V II TS II+T IS +IT++T Sbjct: 71 VIIITTSVIIITIISVIITIMT 92 >SB_16715| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 112 Score = 27.5 bits (58), Expect = 8.5 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -2 Query: 441 FFRGSVFIILTSFIIVTFISRLITVITKLTQIFSRYYLTFVL 316 FF V I+LT+ IIV I +IT+I + IF + V+ Sbjct: 35 FFSLCVDILLTNIIIVIVIIIIITIIIIIVIIFITIIIVIVI 76 >SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2) Length = 545 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/48 (29%), Positives = 26/48 (54%) Frame = -2 Query: 426 VFIILTSFIIVTFISRLITVITKLTQIFSRYYLTFVLFTDFAQ*INVT 283 + I++ II+ I +I++IT + + Y+T ++F INVT Sbjct: 231 IITIISLIIIIIIIIVIISMITIIISLIIIIYVTHIIFNIIIIVINVT 278 >SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1) Length = 670 Score = 27.5 bits (58), Expect = 8.5 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -3 Query: 242 EDPKSARETVCGFVPNTWSSSISTRGFSVSASATLSDNIIFTDFLVFAF 96 EDPKS R+ F + W+S + + A L IF FL F F Sbjct: 67 EDPKSWRKVRPAFKSSLWTSFKTVFATQILAGTGLGLLAIFITFLDFNF 115 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,890,012 Number of Sequences: 59808 Number of extensions: 163181 Number of successful extensions: 534 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 529 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1410146228 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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